Magallana gigas (Pacific oyster): 105340428
Help
Entry
105340428 CDS
T03920
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105340428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105340428
03009 Ribosome biogenesis [BR:
crg03009
]
105340428
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105340428
Spliceosome [BR:
crg03041
]
Complex A
U1 snRNP components
U1 related factors
105340428
Complex B
105340428
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
Pre-60S particles
Helicases
105340428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
105340428
NCBI-ProteinID:
XP_011444763
LinkDB
All DBs
Position
7:complement(47568881..47579556)
Genome browser
AA seq
618 aa
AA seq
DB search
MDLPRMSKVLRLARKSHGMLELLLYESAGKNCRRFSVSSVSQQYERSLDDLLNFGSNDRR
RRYDKQTSHRGQQEGGRGWNSFNRRSVDFQEMEKNFYLEHADVKNIPQEEIEAFYKEHKV
KVFGDVPRPVFDMEHVNFPDEIKDLLAKQGICKPTPIQSLMWPVALSGLDSVGIAQTGSG
KTLGYMLPAIVHSMNQGPRRHEHRKHPRTLVIAPTRELTKQISTVSWPFCKLYRMRTLCL
YGGASKSIQEQDLLRGQDIVVATPGRLLDLLNNYSTLLDEVSYLVLDEADRMLDMGFEPQ
IKSIMNFLNPYRQTTMWSATWPREVENLALSYMSNNVQVQLGSHELTVNQNIEQKIVPVE
DERDKLFKFVEEMKPVLNDPSNKVLIFTNTKVKASDLAYKLKGALRKGITAIHGDISQMN
RERALRDFSKGNVPILVATDVAARGIDVSDITHVVNFDFPKDLTDYIHRVGRTGRAGKKG
NALSFISLQEDGKVCERLVELLRESNQEIPDDLLKASMRKSYFGSSGSYRKFGSGGRKFR
DPYNNENYGGRKFRSRDNFNNEDYGDKKFRSRDTFNSEDYGERKFKSRDTFDNEDNGEKS
YKKRHHNYFQGDSEDASY
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggacctaccccgaatgtcaaaagttttacgcttagcaaggaaaagtcatggaatgctt
gaattgctattgtatgagagtgcagggaagaactgcaggagattttcagtcagctcagtg
tcacaacaatatgaacggagtttagatgatctactcaactttggaagtaatgacaggaga
agaagatatgataaacagacttcgcatagaggacaacaggaaggaggaagagggtggaat
tctttcaacaggagatcagtagacttccaagagatggaaaaaaacttttacctagaacat
gctgatgtgaaaaacataccacaggaagaaattgaagcattttacaaggaacacaaagta
aaagtgtttggtgatgttcctagacctgtgtttgatatggagcatgtcaactttccagat
gaaattaaagatcttctggccaagcagggtatctgtaaacctacccccattcagtccctg
atgtggcctgtggccctgtcagggctggacagcgtgggcattgcacagaccggatcaggg
aaaacccttgggtacatgctaccagctattgtacattcaatgaaccaggggcccaggaga
catgagcatcggaagcatcccaggacgttagttattgcaccaacaagggagctaaccaag
cagatttcgactgtctcgtggccattctgcaaattgtacagaatgaggactttgtgtttg
tatggtggcgcttcgaagtccattcaagaacaagacctcttgcgtggacaggacattgtt
gtggctacaccaggccgactgttggacttgctgaacaattacagcaccctcctagatgag
gtttcgtacttggtgctcgacgaagcagacagaatgctagacatgggcttcgaacctcaa
atcaaaagcatcatgaacttcttgaatccatatagacaaacaacaatgtggagtgctacc
tggcccagggaggtggagaatttggccttaagttacatgagtaataatgttcaggttcaa
ttagggagccatgaattgaccgttaatcagaatattgagcagaagattgtacctgtggaa
gacgaaagagataaactcttcaaatttgtagaagaaatgaaaccagtactaaatgatccc
tccaacaaagtgctgatattcaccaacaccaaagtaaaggcatcagacttggcctacaaa
ttaaaaggagccctcaggaaaggcataactgctattcatggagacatcagccagatgaac
agagagagagccctgagagatttcagcaaggggaatgtacccattcttgttgcaacagat
gttgctgccagaggaatagatgtaagtgacataacacatgtggtgaactttgatttccca
aaagacctgacagattacatccacagagttggacgaacaggacgggcaggcaagaaaggc
aatgctctctcctttatatccctgcaagaggatggaaaagtctgcgagaggctggttgaa
ctactcagggaaagcaatcaagaaattcctgatgaccttttaaaagcctccatgaggaaa
tcatactttggttcctctggttcatatcgaaagtttggttccggaggcagaaagttcaga
gacccatataacaatgaaaattatggaggtcgaaaattcagatcaagagacaactttaac
aatgaagattacggagacaaaaagtttagatcaagagacacctttaacagtgaagattat
ggagaacgaaagtttaaatcaagagacacatttgacaatgaagacaatggagaaaagagt
tataaaaaacgacaccacaattatttccaaggtgactctgaagatgcttcatattag
DBGET
integrated database retrieval system
