Magallana gigas (Pacific oyster): 105340612
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Entry
105340612 CDS
T03920
Name
(RefSeq) DDB1- and CUL4-associated factor 5
KO
K11800
DDB1- and CUL4-associated factor 5
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crg04121
]
105340612
Ubiquitin system [BR:
crg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105340612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
EIF3I
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
105340612
NCBI-ProteinID:
XP_011445058
LinkDB
All DBs
Position
6:38039221..38048346
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AA seq
735 aa
AA seq
DB search
MSMKHQSRNILNVIHDRTLSEKVTSRRILRDRISNTKNLFFKDLKEHFGCVNAIEFSNQG
GELIASGGDDRRVLIWNVEKALSDISKPWTLKGEHTSNIFCLGFDSENTKVFSGGNDEQV
IVHDLKTGETLDVFLHEDAVYGITVNPENGNVFATACDDGRVLVYDMREPPATADAICLA
SYTSSMHAVMYNPAEPRLLATANAKEGLGLWDVRKPKSCLLRYGTSVAQQSANSVRINRS
GDQILALRRRLPPILYSIHSNKPLCEFDHTGYFNSCTMKSCCFAGDKDQYVLSGSDDFRL
YMWKIPEDLSSRRYVNEAHMVLHGHRSIVNQVRFNPDNHIIISSGVEKMIKVWSPFQLPN
TFPAMLFTSNKQRPVYSHEEYINLILNSGQFMSHDYSNQSVEEDPRMIAFFDSLVQRELE
GNSSDPEMLSEEEEIYERFIQLSRSDISDTSEDEVERHGGSSVERLEPESDTDSIDDPAF
SPFTLAFASVMAAQATDTNQTASRLMNALSEDSNHQNNNGENESSRKNISDLIAQKRNEM
KKRVQQGKLLKRRRNQTDSSDSSEDEQPQTGKFSGHPANILAAQTQRRQLQLKRLRQLRN
NVLQTEEDNSDDENQVSSAPVNHSEPSTSKGNPGLGPYLSENGKNNSHYNSCVDTGREAE
KLFSENGPSSSVTQQPKDGVQNHHGDSQQPGCSHDNDENSEEEGSRRKWTEFKCFKNKSK
KNKRTYRKNSDRDDV
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgaaacatcaatcaagaaatattttgaacgtgatacatgacagaactttgtct
gagaaagttactagtaggaggatactgcgagaccgaatatcaaacactaaaaatctcttc
ttcaaagatctgaaagaacactttggatgtgtaaatgccattgaattttccaaccaaggc
ggagaactcatcgcttcaggtggagatgaccgaagggttctgatctggaatgtagagaaa
gccttgtcagatatttccaagccttggacacttaaaggagaacacacaagcaacattttc
tgtctaggttttgattcagagaacacaaaggtcttctcaggaggaaacgatgagcaagta
attgtccatgatttaaaaacgggagagacattggatgtgtttctacacgaggatgctgtg
tatggtatcactgtgaacccagagaatgggaatgtcttcgccacggcttgtgatgatggg
agggtcttggtgtatgacatgagagagcctcctgctacagcggatgcaatttgtttggct
agttacacatcatccatgcatgctgtgatgtacaatccagcagaacctcgtctcctagca
acagccaatgccaaagaaggattgggtttgtgggatgtgaggaaaccaaaaagttgtttg
ttaagatatggaaccagtgttgctcaacaaagtgccaacagtgtccgaataaatcgctcg
ggtgaccagattctggccctgcgccgtagacttccaccaattctgtacagcattcatagc
aacaagcctctgtgtgaatttgatcacactggatatttcaattcctgtaccatgaagagc
tgctgttttgcaggggacaaagaccagtatgttttgtctggatctgatgacttccggtta
tatatgtggaaaattccggaggatttgtcatcaaggcgttatgtgaatgaggctcatatg
gtgcttcatgggcacaggtcaatagtgaatcaagttcgcttcaaccccgacaatcacatc
atcatatcttctggagtggaaaaaatgatcaaggtgtggagtccatttcagcttccaaac
acttttccagcaatgctcttcacgagcaataagcagcgcccagtgtacagtcatgaagaa
tacatcaacctcattctgaacagtgggcagtttatgtcacatgactactccaaccaatca
gtggaggaagatccacgcatgattgctttttttgattctttagttcagagagaattggaa
ggaaacagctctgatccagaaatgttgagtgaagaagaggagatatacgagaggtttatt
cagttatctaggtcagatatttctgacacctcagaagatgaagttgaaagacatggtggg
tcgtctgtggagagacttgagccagagagcgacacggacagtattgatgaccctgcattt
agtccttttactttggcatttgcaagtgtcatggctgcccaagctacggatactaatcaa
acagccagcaggcttatgaatgcgttatctgaagatagtaatcatcaaaataacaatgga
gagaatgaaagctctcgaaaaaatatttctgatcttattgctcaaaagaggaatgaaatg
aaaaaacgagttcagcagggcaaattactgaaaagacggagaaatcagactgactcttca
gactcaagtgaagatgagcagcctcaaactggtaaattttctggtcatcctgcaaatatt
cttgctgctcaaactcaaagaaggcaattacaactcaaaagactcagacaactcagaaat
aatgtgctacagacagaagaagataacagtgatgatgagaaccaagtgtcttctgctcct
gtcaatcattcagagccttcaacttcaaaaggaaatccagggttgggtccatatttatct
gaaaacggtaaaaacaattcgcattataactcctgtgttgacactggccgagaagcagaa
aaacttttcagtgaaaatggaccatcaagttcagtaacccagcaaccaaaagacggtgtt
cagaatcaccatggtgacagtcagcaacctggttgtagtcatgacaacgatgaaaacagt
gaggaagagggtagtaggagaaaatggacagaattcaaatgtttcaaaaacaaatcaaaa
aagaataagagaacttatcgtaaaaacagtgaccgggatgatgtgtaa
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