Magallana gigas (Pacific oyster): 105341532
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Entry
105341532 CDS
T03920
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105341532
03016 Transfer RNA biogenesis [BR:
crg03016
]
105341532
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105341532
Spliceosome [BR:
crg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105341532
Transfer RNA biogenesis [BR:
crg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105341532
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105341532
NCBI-ProteinID:
XP_034335895
LinkDB
All DBs
Position
3
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AA seq
732 aa
AA seq
DB search
MTAFEEMGVMPELGQAVEEMDWSLPTDVQAEAIPMILGGGDVLMAAETGSGKTGAFCLPI
IQIVYETLRDQQEGKGSKLSSHHSGSTHSAHWKMSPYDRGDAMAIDPEGLLCQARDAQGW
HGTRTNKAVVGGGKYYYEATVTDEGLCRVGWSTDKATLELGIDKFGFGFGGTGKKSWGKQ
FDSYGEAYGINDTIGCYLDLDKMEIKWSKNGVDFGKAYDIQAHLKNERFYAAVTLKNAEM
KFNFGNTPFKYPPQGGFKALSNAPSENVVQSRIVASGAVNAKPASNAPQAIIIEPSRELA
EQTFNQIQKFKLHLSNPTIRELLIIGGVNIRDQVEVLETGVDVVVGTPGRLEDLISTGRL
ALHQCRFFVLDEADGLLSAGYGDMINRLHQQIPKVTNDGKRLQMIVCSATLHSFDVKKMA
ERLMYFPTWIDLKGQDAVPETVHHVVCDVDPEVDTRWKSLKNHVETDGVHYNDKVSPNNL
SRETMSEAVKILKGEYVIQALEEHKMDKALIFCRTKLDCDNLEKYLQQRGGGKYSCVCLH
GDRKPQERKANLQKFKDNKVRYMICTDVAARGIDINGLPYVINVTLPDEKQNYIHRIGRV
GRAERMGLAISLVATVKEKVWYHSNCNTKGRGCYNTNLTDHGGCCIWYDEPKLLSDVQEH
LDITIDKVDPSMKVPVNEFDGKVTYGQKRRNTGGSYQGHVASLAPAVKELAELEKRAQTS
FIDLKYRKFAQR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttgaagaaatgggtgttatgcctgaacttggacaggcagtggaagaaatg
gattggagtttgccaaccgatgtacaggcagaggcaattccaatgattctgggaggtgga
gatgttttaatggctgctgaaactggaagtggaaaaacaggggcattttgtttgccgatt
attcaaatcgtttatgagacattgagagatcaacaagaaggaaaagggagcaagctgtcc
tctcaccattcaggatctactcatagtgcacattggaagatgagtccatacgacagaggt
gatgccatggcaatagacccagagggactgttatgtcaggctagggatgcacagggctgg
cacgggaccaggaccaacaaggcagtggtgggcggaggaaagtactactatgaggccaca
gttacagatgagggtctgtgtcgtgttggctggtccacagataaagcaacgctagagtta
gggatagacaagtttgggtttggctttggaggcactgggaagaagtcctggggcaaacag
tttgacagctatggagaggcttatggaattaatgacaccatcggctgttaccttgatttg
gataaaatggaaattaaatggtccaaaaatggagtggattttggaaaagcctatgatatc
caagcacatcttaaaaatgaaagattttatgctgcagtgacactcaagaatgctgaaatg
aaattcaactttggaaacacaccatttaaatatcctccacaaggtggatttaaagctctg
tctaatgccccatcagagaatgttgtacaatctagaattgtggcttcaggagctgtgaat
gcgaagcctgcctcaaatgcccctcaagccatcataatagaaccttcaagagaactggca
gaacagacatttaaccaaatccagaaatttaagttgcatcttagtaatccaactataaga
gagctgcttataattggtggagtgaatatcagagaccaagtggaagtactagaaactgga
gtggatgtagtggttggcacccctggtcgtctggaagatctgatctccaccggaaggctt
gccctgcatcagtgccgcttctttgtactggatgaagctgatggattgctgtctgctgga
tatggggacatgatcaacagacttcatcaacagatccctaaggtcaccaacgacggcaaa
cgcctgcagatgattgtctgctcagctacgcttcactcctttgatgtcaagaaaatggct
gagaggttaatgtatttccccacttggattgacctgaagggacaggatgctgtgccagaa
acagttcaccatgtggtgtgtgatgttgacccagaagttgatacaaggtggaaatcactc
aagaaccatgtagagactgatggagtacactataatgacaaggtgtcacccaacaacttg
tcaagagagaccatgtcagaagcagtgaaaatcttgaaaggagagtatgtgatccaggct
ttggaagaacacaagatggacaaggccctcatcttctgtagaaccaagctggactgtgac
aacttggagaaatacctacaacagagaggaggaggcaaatattcctgtgtttgtttgcat
ggagacagaaaaccacaagaaagaaaggcaaaccttcaaaagtttaaggataataaagtc
cgctatatgatttgtacagacgttgctgcccgaggaattgacatcaatggtttgccttat
gtcataaatgtgacgcttcctgacgaaaaacagaactacatccatcggattggcagagtc
ggaagagctgaacggatgggtttagctatatctttggttgctacagtaaaggaaaaggta
tggtaccattcaaattgcaacaccaagggacggggctgctacaacacaaatctgactgac
catggcggctgctgtatttggtacgatgaaccaaagctactctcagacgtacaggaacat
ttagatattaccatcgacaaggtcgatcccagcatgaaggtcccggttaatgagtttgac
ggcaaagtgacgtatggacagaagcgcagaaatacaggtggatcctatcaaggacatgtg
gcttctctggcacctgcagtgaaagaattggccgaactggagaagagagctcagacttcg
tttattgatctgaagtacagaaagtttgcccagcgatag
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