Magallana gigas (Pacific oyster): 105341865
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Entry
105341865 CDS
T03920
Name
(RefSeq) ATP-dependent RNA helicase DDX3Y isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105341865
03041 Spliceosome [BR:
crg03041
]
105341865
03036 Chromosome and associated proteins [BR:
crg03036
]
105341865
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105341865
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105341865
mRNA cycle factors
Common to processing body (P body) and stress granule
105341865
Spliceosome [BR:
crg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105341865
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105341865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105341865
NCBI-ProteinID:
XP_011446924
UniProt:
A0A8W8MU34
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All DBs
Position
8:45584751..45600205
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AA seq
793 aa
AA seq
DB search
MSNVHNQNGQGLEQQFAGLDLGSGGRPYNGKDGRNYRPSNANPRFQEQMFFMTGQGNQGT
RYVPPHMRNAGGPAPPPMGIVPNFPPPPLPENRGGRDGGFSRGGYNQGRGGYMNGGPPQS
FSQPNMSDRGGYNSYNRGGYNQGGGNRGGYNYQNRRGGGGGYQNNAPGRYGGGGGGDRYN
NFGDGDRYQRQGSAPPNAGGRWDNLDEDRSFSARRGGGQQDGGDWGNNNRWDNRTDNNAG
GKYPQETTKENWTVPLPANQRLEEELFGSGNTGINSDKELFGTGNTGINFDKYEDIPVEA
TGENCPKNIETFEDCSLGEIIRNNITLSRYSKPTPVQKYAIPIVLNKRDLMACAQTGSGK
TAAFLVPVLNRVYENGPEESANVAQSRQYGRRKQYPLALVLAPTRELAYQIYDEARKFAY
RSRVRPCVVYGGADIGAQMRDLDRGCHLLVATPGRLVDMLERGKIGLEHCKFLCLDEADR
MLDMGFEPQIRRIVEKDNMPPSGVRQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGST
SENITQKVVWVEEMEKRSFLLDLLNAAAGPDSLTLVFVETKKGADSLEDFLIREGYPATS
IHGDRSQKEREEALRLFRSGDRPIIVATAVAARGLDIQNVRHVVNFDLPSDIEEYVHRIG
RTGRVGNLGLATSFFNEKNKNIVRDLMDLLVEAHQEVPSWLESMAYEARPAGGSRRGGGR
RFGNSGFGSRDYRQQTKPKQQQQQQQGGAGGGYNSNFNNPMANQYGQYSNYGGSYGGAYS
GGGNNAAPDWWGN
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgttcataatcaaaatggtcaaggtctagagcagcagtttgctggtttagac
ttggggtctggtggcagaccatacaacggtaaagatggacgaaattatcggccaagcaac
gcaaaccccagatttcaggaacaaatgttcttcatgacaggacagggtaaccaaggaaca
agatatgtgccgcctcatatgagaaatgcaggaggacctgcccctcccccaatggggatt
gtgcccaacttccccccacccccattgcccgagaacagagggggtagagatggaggattt
agccgaggaggatacaaccagggacgtggaggctacatgaatggagggcctcctcaaagc
ttcagtcagcccaacatgagtgaccgtggaggttataatagctacaatcgtggtggttac
aaccagggagggggtaatcgtggtggatacaattaccagaaccgccgtggcggcggcggc
ggctaccagaataatgctccaggaagatacggcggtggtggcggcggtgatcgctacaac
aactttggtgatggggaccgctaccagagacaaggcagtgccccacccaatgctgggggt
cgctgggataacctggacgaggaccgcagtttcagcgctcgccgtggcggtggacagcaa
gatggcggtgactggggcaacaacaaccgctgggacaaccgcactgacaacaacgccggg
ggcaagtacccacaggaaaccaccaaggagaattggaccgtcccactgccagccaatcaa
aggctggaggaagagctatttggcagtggaaacactggtatcaattctgacaaagagcta
tttggcactggaaacactggtatcaattttgacaagtatgaagatattcctgtagaggca
acaggagagaactgccctaaaaacattgagacatttgaggattgtagcctgggagagatc
atcagaaacaacataacgctgagtcgctactccaagccgacccccgtacagaagtacgcc
atcccgatcgtgctgaataagagagacctaatggcctgtgctcagacaggatctggtaag
actgctgctttcctggtccctgtgttgaacagagtgtatgaaaatggacctgaggaatct
gctaatgtagcacagtccagacaatacgggcggaggaagcagtaccccctggcccttgta
cttgccccaacaagagaattggcctatcagatctacgatgaagcaagaaagtttgcctac
cgatcgcgagtgagaccctgtgtggtgtacggtggtgccgacatcggcgcccagatgcgg
gacctggaccgtggctgtcatcttctggtggccacccctgggcgtctagtcgacatgctt
gagaggggcaagattggactggagcactgcaagttcctgtgtttggacgaggctgacaga
atgttggacatgggatttgagccacagatccgtcgcatcgtggagaaagacaacatgcct
ccaagtggagtgaggcagactcttatgttcagtgccacattccctaaggaaattcagatg
ctagctagagatttcctggacaactacatcttcttggcagttggtcgtgtgggcagcaca
agcgagaacatcacccagaaggttgtgtgggtggaggagatggagaagcgctctttcttg
ctggatctcctgaatgccgctgcggggcccgactccctcacccttgtgttcgtggagacc
aagaagggcgccgactcgcttgaggattttctaatcagggaggggtaccccgccaccagt
atccatggcgatcgctctcagaaggagcgagaggaggctctcagactgttcaggagtgga
gacagacccatcattgtagctactgctgtggctgcaagaggattggatattcaaaatgtc
cgacacgtagtgaactttgacctgccaagtgacattgaggagtatgtacatagaatcggt
agaactggacgtgtgggaaacctgggtctggccacatccttcttcaacgagaagaacaaa
aacattgtgcgtgacctgatggacctactggtggaggcccaccaagaggtgccttcctgg
ctcgagtccatggcctatgaggcccgcccagcagggggatcaagaagaggtggcggaaga
agatttggaaactctggctttggatccagagattatcgtcagcagaccaaacctaagcag
cagcagcagcagcaacagggcggggcgggaggtggctacaacagcaacttcaacaacccg
atggccaatcagtacggccagtacagcaactatggtggctcctatggcggggcctactct
ggtggtggcaacaatgcagctccagactggtggggcaactga
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