Magallana gigas (Pacific oyster): 105342030
Help
Entry
105342030 CDS
T03920
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105342030
03009 Ribosome biogenesis [BR:
crg03009
]
105342030
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105342030
Spliceosome [BR:
crg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105342030
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
90S particles
Helicases
105342030
Pre-60S particles
105342030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
105342030
NCBI-ProteinID:
XP_034333128
LinkDB
All DBs
Position
9:complement(47004736..47078822)
Genome browser
AA seq
657 aa
AA seq
DB search
MGKQKKIPKVLPSKAKMKGLKKNLKDSSTSSNKEKPSRIADISKDVEDSSDENEFDEIDE
EIVDDRQVNDSDENEAESDDDDDDDDDDDDDDDDDDDDENLEEEEEEVDDKDSKKRKLKP
DQFESDKSPKKKMKTDSESKETQKEEQKLPGKTSGGGILTDTSFSSLQGVISDLSLKGIA
DMGFIHMTEIQANTIPHLLEGRDLMGAAKTGSGKTLAFLLPAVELLNKLKFMPRNGTGCI
IISPTRELSMQTFGVLKELLKYHCHTYGLIMGGTSRVEEAKKLGKGINILVATPGRLLDH
LQNTPNFMYKNLQCLIIDEADRILEIGFEEEMKQIMKLLPKRRQTMLFSATQTRKVEDLS
RISLKKEPLYIGVDDRKDSATVEGLEQGYVVCPSDKRFLLLFTFLKKNRKKKVMVFFSSC
MAVKFYHELLNYIDIPVMCIHGKQKQTKRTQTFFQFCNSKESILLCTDVAARGLDIPRVD
WIVQYDPPDDPKEYIHRVGRTARGEGGVGHALLILRPEELGFLRYLKHAKVPLNEFDFSW
SKISNIQAQLEKLIEKNYFLHKSAQEAYKSYIRAFASHSLKNIYDVNTLDLQKVALSFGF
HNPPYVDLDVHGKKGGKSKSHRGKPGGFGYSRDKFENKAKIYKPIKSKGHNNRQFSR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcagaaaaagatcccaaaagtattgccgtccaaggctaagatgaaaggtttg
aagaagaatttaaaagattccagcacaagtagcaataaagaaaagccctcaaggattgct
gatatcagtaaggatgttgaggatagtagtgatgaaaatgaatttgatgaaattgacgaa
gaaattgttgatgatagacaagtcaatgatagtgatgaaaatgaagcagaaagtgatgat
gatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgaaaat
ttagaagaagaagaagaggaagttgatgacaaagacagcaaaaaaagaaagcttaaacct
gatcagtttgagagtgacaaatccccaaagaaaaaaatgaaaacagacagtgaatctaaa
gaaacacaaaaagaggaacaaaaattacctgggaagacgtccgggggagggattctgact
gacacatccttctcgtctctccagggcgtgatctctgacctctctctgaaaggaatcgca
gacatgggcttcattcacatgacggagattcaggctaacacaatcccacacctgttggaa
ggaagggatttgatgggagcagctaagacaggtagcggtaaaacactggctttcctccta
ccggctgtggaactcctcaacaaactcaagttcatgcccagaaatggaacagggtgcatc
atcatctcaccgactcgagagctgtccatgcagacgtttggggtcctgaaggagctacta
aagtaccactgtcacacctacggtcttatcatggggggcactagtcgggtggaagaggcc
aagaaactcggcaagggcatcaacatcttggtagcgacccctggacgattacttgaccat
ctgcagaatacgccaaactttatgtataagaacctacagtgtctgataattgatgaggca
gaccgaatcctggaaatcgggtttgaggaagagatgaaacagatcatgaagcttttgcca
aagaggcgacagaccatgttattctcagccacacagacaaggaaagtggaggacttgtcc
cggatatccctgaagaaggaaccgctgtatattggtgtcgatgaccgcaaggacagcgcc
acagtggagggactggaacagggctatgtggtctgtccctcagacaagagatttcttctt
ctctttaccttcttaaaaaagaaccgaaaaaagaaggtgatggtgtttttcagctcttgt
atggccgtcaaattctaccatgaacttctaaactacatagatataccagttatgtgtatt
catggaaaacagaaacagaccaagagaacccagaccttcttccagttctgtaactccaag
gagtccatcttgttgtgtactgatgtggccgctagaggtctggacatcccccgagttgat
tggattgtacagtacgaccccccagatgatcccaaggagtacattcaccgtgtaggtaga
acagcccgtggagaggggggtgtcggtcacgctctgttaattcttcgtcctgaagagttg
ggcttccttcgttatctgaagcatgctaaggtgccactgaatgaatttgacttctcttgg
agtaaaatctcaaatattcaggctcagctggagaagctgatagaaaagaactacttcctc
cacaagtcggcacaggaagcgtacaaatcgtacatccgggcgttcgcctcacacagcctt
aagaatatctacgacgtcaatactctagatttacagaaggtggcactctcatttggattc
cacaaccctccctatgtagatctagatgttcacggaaaaaagggaggtaaatccaaaagc
cacagaggtaaacccgggggttttggttacagcagagacaagtttgagaacaaagcgaaa
atctataaaccaatcaaaagtaaaggacacaacaatcggcagtttagtcggtga
DBGET
integrated database retrieval system
