Magallana gigas (Pacific oyster): 105342118
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Entry
105342118 CDS
T03920
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105342118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crg03009
]
105342118
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
105342118
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_EML_2
WD40
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_1st
Tricorn_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_ACSF4
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Beta-prop_DCAF12
HEPN_RiboL-PSP
Motif
Other DBs
NCBI-GeneID:
105342118
NCBI-ProteinID:
XP_065935456
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All DBs
Position
3:complement(34174935..34182735)
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AA seq
672 aa
AA seq
DB search
MGEFRVHRVRFFEYQPKAIQCIVYGKEVNKVALSRSDGCIETWDLKNDWYQDKVIQGSES
KSIETLCWQGERLYSAGLDGDVVEYDLKKLEPKASASSNAGPVWCLTTDSHGKFLAAGTE
DGCVVLFDTDYNSLQYYRSFDKQEGRILSIAWNTSLEVILTGGVDNMRLWSVKSGHAVQR
MTLGRVEKSKETIVWCVAILSDMTLVSGDSRGRTIFWNGKQGTQIKSFQMHQADVLCLAV
HQDEKQVFSSGVDPKVVQFQYTTTSRESDWKMWVRTKIWYQHTHDVRAMAVTPTDVVSGG
VDTTLLANRLGNEKNKRKMRSIPMHQLVGVAKDRNALLLQYPDYLELWRLGNTRKTSEKD
GEVLPEEIPPQKLIQLKTKDGQHIACSAISSRANWMSYSDIDGFKLYKITMTGTESISPS
VDLRKVKKGLPSYSAHRIVFTPDEKFLVIATSCQKIVVISLDEDSVSLYHAWDDYTEESI
HQLSVSPNSKLVAVADLSYKITVLGVESKEVVSQLPSYKSTVTAMTFTPDSRNLITAHAD
QKIYEFDVEKKEYSDWCREVCNKFPNAWKKRHQIIHHISTSPRYPDKIFFCDLDKFFILD
KTQPFPSIGSKPFNLVARPNSSKVSAFHVCTRFRYLIHMDFVNDDWVVMVERTKLAMMES
LPMAMQQKKFGT
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgggggaattcagagttcatcgagttcgattttttgagtatcaaccaaaagcgattcag
tgtattgtttatggaaaagaagtaaataaggttgcattatccaggtctgatggatgtatt
gagacttgggacttaaaaaatgattggtatcaagataaagtaatacaagggagtgaatcc
aaatcaatagagactttgtgctggcaaggagagagattatattcagctggtctggatggg
gatgtggtggaatatgacctaaagaagctagaacctaaggcctcagcatcatctaatgct
ggacctgtatggtgtttaactacagactcacatgggaaatttctggctgccggtacagaa
gatggttgtgtggttttgtttgacacagactataattctctacagtattacagatctttt
gacaagcaggaagggagaatcttgtctattgcttggaacaccagtttggaggtcatcctt
acaggtggtgttgacaacatgagactgtggagtgttaaatcaggtcacgctgtacagaga
atgactctggggagggtggagaagagcaaggagaccatcgtgtggtgtgtggccatcctc
agtgacatgacactggtcagtggagactccagagggagaaccatattttggaatggaaaa
caaggaactcaaataaagagctttcaaatgcaccaagctgatgttttgtgtttagctgtt
caccaggatgaaaagcaagtgttctcctcaggggtggaccccaaggtggtacagttccag
tacaccaccacgagtcgagagagcgactggaagatgtgggtcagaaccaaaatctggtac
caacacacccatgatgtgcgggctatggctgttacccccactgatgttgtgtctgggggt
gtggacacaactcttctagctaatcgacttggtaatgagaaaaacaaaagaaaaatgaga
tcaatccccatgcatcagttggtgggcgtggcaaaggacagaaatgccctcctgctgcag
taccccgactacctggagctatggagactgggaaacaccaggaaaacctcagagaaagat
ggggaggttttacctgaggaaatccctccacagaagctgatccagctgaagacaaaagat
gggcagcatattgcctgtagtgcaataagttctcgtgcaaactggatgtcatactcagac
atagatggcttcaagctgtacaaaataacaatgactggcacagaatccatctcaccatca
gttgatctcaggaaggtgaaaaaaggccttccttcctattcagctcatcggattgttttc
accccagatgaaaagttcttggtgatagctacatcctgtcaaaaaattgtagttatctcc
cttgacgaggactctgtgtctctgtatcatgcatgggatgattacacagaggagtctata
caccagctgagtgtcagccccaacagtaaactggtggctgtagctgacctgtcctacaaa
ataacagtgctgggggtggagtccaaggaggttgtgtctcagttgcccagctataaatca
acagtaacagctatgaccttcactccagacagtcgtaatctgatcactgcacatgcagat
caaaagatttatgagttcgatgtcgagaaaaaggaatatagtgattggtgtcgggaggtg
tgtaacaagttcccgaacgcctggaagaagaggcatcagatcatccaccatatctccacc
tctccacgctatcccgataaaatattcttttgtgatctagacaagtttttcatcttagac
aaaacacagccattcccaagcataggatctaaacctttcaacttggtagccagaccaaat
tcttccaaagtgtctgcatttcatgtttgtacaagatttcgttatcttattcatatggac
ttcgttaatgatgattgggttgttatggtagaacgcacaaaactagcaatgatggagtcg
cttccaatggcaatgcaacaaaagaaatttggaacttga
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