Magallana gigas (Pacific oyster): 105342182 Help Entry 105342182         CDS       T03920                                  Name (RefSeq) symplekin   KO K06100   symplekin Organism crg  Magallana gigas (Pacific oyster) Pathway crg03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:crg00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     105342182  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:crg03021]     105342182    03019 Messenger RNA biogenesis [BR:crg03019]     105342182 Transcription machinery [BR:crg03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      105342182 Messenger RNA biogenesis [BR:crg03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      105342182     U7-dependent histone pre-mRNA processing factors      105342182 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT Adaptin_N INTS1_R4 SPG48 Motif Other DBs NCBI-GeneID:  105342182 NCBI-ProteinID:  XP_011447365 LinkDB All DBs Position 6:complement(49881937..49899401) Genome browser AA seq 1285 aa AA seqDB search MADESRRSTAAQFFMDEEDKHNESISTYDKVVELINQASLMSKEAQKINILRQVQELIIH KDPTLLDNFLDEMLAFQSDRSVDVKKYVITFMEEACKKDPELLNKILPCLQILLQDDNVN VQKKVILSLPQVYKVIVKWLAKAKNVTEEKSFVWETMKSLKNRMFELIDSENDGIRTHVV KFMEGVILTLSRKTPDSEVPKSSKPDAEVTLDLVPEDNKYLKVKRLEEQGKQMFETLLQF QASPHISSINLMTVMGSLTTIARQRPYFFGKVVQSFETLQVNLPPTLAKSQVSSVRKNMK MHMLSLLKHKASVDYITQITTLLTDLGATNSEVMKNMPKIDESRKRKLEDSGGTTKKAKI ESEIELDDDDAGMTPFVDRSKVKAPATLKQRQTAVDITAEDIIPRLTPQNVADLVLISMV MLPDQLPPHFQATYTPIAAAGTEGQIKHMGRLLANQLTAAGMGKGIAEVQLEEVSEEDGG ASPEYQPTSPKQVIQTVVGGLTEALGPSSSKAANLPAAPQIRSVRPGIKQFKLSTVTSDL DRDRLDEMTIASVKRILQAEKSASLGNALSARTKLLTSLVSQFGGELKNLLQEYIFEDLR NRSDLAFAWLYQEYANCQGFCASNLRNERTSLASYDECLTRLLSGLLERTEQTTKEGLFH RLILEAPAITDNAIQILKKYCMDQDRVVSGINTLRQLILTRPAHRLRFLEVLLMSCHHDM PEVRATAIHCSKQLYEKGHIRPYIEQYATKMLKNLLLTKPPTEMLGKSKNDPALQSWTED TIKMCLYLYLGLLPNNHKLIHQLAMVYTSAGADIKRIILRALENPVKGMGMKSPELLTLV ESCPKGAETLVTRVIHILTDKASPSPELVERVRDLYHKRVPDVRFLIPVLTGLSKDEVIQ ALPKLIKLNPIVVKEVFNRLLGGHSDANYTSPLTPVDLLIALHNIDPTKCDMKTIIKATN LCFSEKNIYTQEVLAVVMKTLMEQDPLPTLFMRTVLQSLSMYPRLMGFILNILQRLISKE VWKNKKVWEGFIRCCQKMKPQSFTVLLQLRAPQLKSVFESCPDLREPLLTHVNSFAPNQK AHLPKTVLAVLENPPEVAPAPAQPTEGPPSTPTILPATPTVLTAPPTQVTVVKVEESAPA PMETQTIQTVQSIQTIGSNLVQIKQEPRDVDETAAQVSENRDKQAKSSSDRKETPSRRGS KRSTEDKPDTEMEEVDSPENALAIAEEAMDTSVNNDPQGDQSQDSTGDSTSKKSRSRSKS SESRSSETRSTEGEVRPRRSTRSRK NT seq 3858 nt NT seq  +upstreamnt  +downstreamnt atggcggacgaaagcagacgatcgactgcagcacagttcttcatggacgaggaagacaaa cacaatgagtcgatatcgacttatgataaggttgttgaactcattaatcaggcttctttg atgtcaaaggaagcccaaaagataaacattctcagacaggttcaagaattaatcattcac aaggatccgactttgcttgataatttcttagatgaaatgcttgcttttcaaagtgaccgg tcagttgatgtgaagaaatatgtgataaccttcatggaagaggcttgtaagaaagatcct gagctgttaaacaagatactgccctgtctgcaaattcttctgcaagatgataatgtcaat gtccaaaagaaagtcatattgtctttacctcaagtttataaagtcatagtaaaatggcta gctaaggccaaaaatgtaacagaagaaaaatcttttgtgtgggagactatgaaatccctg aaaaacagaatgtttgagcttattgactcagagaatgatggaataagaactcatgttgtg aagtttatggaaggggttattttgactctgtctcgtaaaactccggattcagaggtacca aaatcttcgaagcctgatgctgaggtcactttggatcttgttccagaggacaacaagtat ctaaaagtcaaacgtttggaggagcaaggcaaacagatgtttgaaacacttctgcaattc caagcctcacctcacatttccagtataaacctgatgacagtcatgggaagtctgaccacc atagccagacagaggccgtacttcttcgggaaggtggtgcagtcttttgagactttgcag gtaaatcttccgcccacactggcgaagtctcaggtgagcagtgtgcgtaagaacatgaag atgcacatgttgtccctgctgaaacacaaggcctcagtggactacatcacacagataacc acactcctgacagacctgggggccaccaactcggaggtgatgaagaatatgccaaagatt gacgagagcaggaagaggaagctggaggactcgggcggtacaacaaagaaagccaaaata gagagtgagattgaattggatgatgacgatgctggcatgactccttttgtggatcgctct aaagtaaaagcacctgcaaccctcaaacagcgacagactgcggtagacatcaccgctgag gacatcatcccccgcctgactccacagaatgtggcagatcttgtcctgattagcatggtg atgttgccagaccagcttcctccccatttccaggcaacctacacccccatcgctgctgcc gggacagagggacagataaaacacatggggcgcctactggccaatcagctcactgctgct ggaatgggcaagggcatcgctgaagtccagctagaggaggtgtctgaggaggatggaggg gcgtcccctgagtaccagcccacctctcctaaacaggttatacagaccgttgtaggtggc cttacagaagcacttgggccgtcatcttcaaaggcagctaatctaccagcagctccacaa atacgatctgtgagacctggaatcaaacaattcaagctgtccacagtgacctctgacctg gacagagacaggttggatgaaatgaccatcgcctcagtcaaacgaatcctacaagcagag aaaagtgcatcattagggaatgctttgtcagccagaaccaaactactgactagccttgtg tcacagtttggtggagaattaaaaaacttgctacaagaatatatatttgaggacctgcgt aatcgttctgaccttgcctttgcctggctgtaccaggagtatgccaactgtcagggattc tgcgcgtctaatcttcgcaatgagcggacctccctggccagctatgatgaatgcctgaca aggctgttatcaggcctccttgagcgaactgaacagaccacaaaggagggattgtttcat cgtctaattttggaagctcctgccattactgataatgccattcaaattctcaagaaatat tgcatggaccaggatcgggtggtgagtgggatcaacacgctgcgtcagctgatcctgaca cgccccgcccacagactgaggttcttagaggtcctccttatgtcatgtcaccatgacatg cctgaggtcagggccactgccatccactgcagtaaacagctgtatgagaaggggcacatc aggccctacatagagcaatatgccacaaaaatgttgaagaatctcttgctaacaaaacca cccacagagatgcttgggaaaagtaaaaatgaccctgccttgcagtcctggactgaggac actatcaagatgtgtctgtacctgtatctcggcctcctgcccaacaatcacaagctgatt caccaattggcaatggtgtacacctcagctggagctgacatcaaaagaatcattcttcga gctctagagaacccagttaaaggaatgggaatgaaatcacccgagctgttgactctggtg gagagttgtcccaagggagcagagaccctcgtgaccagggtcattcatatcctgactgat aaagcctctccatcgcctgagttggtggaacgagtccgagacctttatcacaagcgagta cccgatgtccgattcctgatacctgtactgacagggctgtcaaaggatgaagtaatacaa gctctacctaaactcatcaagctgaaccccattgttgtaaaagaggtgtttaaccgtctg ctaggtggccatagtgacgccaactacacatctcctctcactccggtcgatctgttgata gcactgcacaacattgacccaaccaagtgtgacatgaagaccattatcaaagccaccaac ctgtgcttcagtgagaagaatatttacacccaggaggtgttggctgtggtgatgaagact ctgatggagcaggaccccctacccacactgttcatgaggaccgtcctacagtccctatca atgtaccccaggctgatgggcttcatcctcaacatcctacagagactcatatctaaagag gtttggaagaacaagaaggtatgggagggatttatccgctgttgtcagaagatgaagcct cagtccttcactgttctactacagctcagggctccccagctcaagagtgtatttgagagt tgtcccgacctcagggagccccttctgacacatgtcaactcttttgctccaaaccagaaa gcccacctaccaaagacagtattagctgtactggagaatccccccgaggtagcccctgct ccagcccagccgactgagggacctccctcaacccccaccattctccctgctacacccaca gtccttacagccccaccaacacaggtgaccgtggtgaaggtcgaggaatcagcccctgca cctatggagactcagaccatacaaacggtccagtctatacagacaataggctcaaacttg gttcagataaagcaagagccgcgtgatgttgatgagacagcagcacaggtatcggaaaac agagacaaacaggccaagtcatccagcgacagaaaagagaccccctccagaagaggctca aagaggtcaacagaggataaacctgacactgaaatggaggaggtggactccccagagaat gccctggccattgctgaggaggccatggatacatctgttaacaatgacccccagggagat cagtctcaagattccacaggagatagtacttcaaaaaaatcaaggagccggtcaaaatca tcagaatctaggtcatcagaaactaggtcaactgaaggagaggtcaggccgagaagaagc acaagatcacggaaataa

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