Magallana gigas (Pacific oyster): 105342587
Help
Entry
105342587 CDS
T03920
Name
(RefSeq) structure-specific endonuclease subunit slx1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
105342587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105342587
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
105342587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
zf-HC5HC2H
FANCL_C
zf-HC5HC2H_2
PHD_NSD
C1_2
T5orf172
PHD
Motif
Other DBs
NCBI-GeneID:
105342587
NCBI-ProteinID:
XP_011447884
UniProt:
K1QSF5
LinkDB
All DBs
Position
6:53169526..53171984
Genome browser
AA seq
292 aa
AA seq
DB search
MDASAEIEQFFGVYLLYNVNPQFKGRTYIGFTVNPNRRIQQHNKGKHAGGAWRTHGRGPW
EMVLIIHGFPNEISALRFEWAWQNPKKSRRLKHLPAKTKKENQFQYRFRIVSAMLNTCPW
CRFALTIRWLKQQYVLDFPLEYSPPAHMPIAYGPVRIKKSGTNSKRGKTEPPNEQGDEED
IEFLSLLRRNEKYVRCSVCRERTKDHDTLLKCIHPKCSMQAHIICLSKKFLNNQAGQLIP
VDGKCPSCKAVVLWGDLIRAKHGCYQNLEECTSAEEDTEDADWTDQLQSHVT
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggacgcctctgcagaaatagaacagttttttggagtgtatttgttgtataacgtaaat
ccacagtttaagggcaggacttatataggattcacagtaaaccctaacagaagaatccaa
caacataataaagggaaacacgctggcggggcgtggcgaacccacggacgcgggccttgg
gaaatggtacttattatccacggctttcctaatgaaatatcggctttgcggttcgagtgg
gcgtggcaaaatccaaagaaatcccgaagattgaaacatttaccggccaaaacaaagaaa
gagaaccagtttcagtacagattccgaattgtttctgccatgttgaacacctgtccttgg
tgcagatttgctttgacaattaggtggcttaaacagcagtatgtactcgacttccctctg
gaatatagcccaccagcacacatgcccatagcatatggtcctgtccggataaaaaagagt
ggtacaaacagtaaaaggggtaaaacagaaccaccgaatgaacagggggatgaagaggat
atagaatttctaagtcttcttaggaggaatgaaaagtatgtccgatgtagtgtttgtagg
gaaaggaccaaggaccatgacacattattaaagtgtattcatccaaagtgctccatgcag
gctcatataatctgtctatcgaaaaagttccttaataatcaggcaggacagctcataccg
gtggacggcaagtgtccatcttgtaaagctgtggttctgtggggagacctgatcagggcc
aagcatggctgctaccagaacctggaggaatgtacgagtgcggaggaggacacagaggat
gctgattggacagatcagttacaaagtcatgtcacatga
DBGET
integrated database retrieval system
