Magallana gigas (Pacific oyster): 105343010
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Entry
105343010 CDS
T03920
Name
(RefSeq) single-minded homolog 2 isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04137
Mitophagy - animal
crg04140
Autophagy - animal
crg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105343010
04137 Mitophagy - animal
105343010
04148 Efferocytosis
105343010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105343010
Transcription factors [BR:
crg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105343010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
PAS_9
PAS_4
bHLH_HIF1A
PAS_2
bHLH_NPAS4
Neuralized
Motif
Other DBs
NCBI-GeneID:
105343010
NCBI-ProteinID:
XP_034325325
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Position
6:complement(4447942..4486593)
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AA seq
889 aa
AA seq
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MSVYKKIKMLSVQDNNQLIENVEHLEKMETGVKGRRLTRAEKSRVAAQGRRDKEAVEMAN
LIDLLPYEPSALSKMDKNSLLELILNYLRMKQYLEKEMAKLSLQDVEPTTEEKSPMPVVK
KNGTHHLVLNGVEQCKVEESQLMLEAMNGFLLLLDRKKKILYVSDGVATHLGIDQVQLLG
KKVTTLIHPSDIPELKKQFNLKPCEMHCSCPVNMDNSDKHVPHLDDNRVFYLRMKCVLKK
NGIRTKQSGFVLMQCSGRLKMRATASRANSYSVDGLICICRPMQTNSVMEIRLDGSMFIS
RHDLGMKFTFCDPRIATLIGYDPEEVIGKTAYQFHNPLDAKLVGDCHQKLIVKGSSVSNY
YRFIGKNCQWVWMQTRATIIYNTSNVPQYIVCMNYIISEEEGEQFLRMQQGHILQSLDGA
QAIEPVKSSKSEDQHSDNGYWSSNSPYSSHHPSPGSTDGPTAGSTENLSTGNEFPTGVFQ
QVVDTINSHSSPPEEVLKILEEIEKEGRKRSPGNTTPYSKTFTASAMDTVTPGNQTPSYQ
NLLDSEPHSIKSNHIANLPTTSEHNAICENNSTVPSHGLMNVQIAALNSTDFAPGCAVTE
ALPQEITDFCMQYCNSMADQQAQQVLSELGQNSFGAEFEQFESESEMNGMNHCDLTLNTP
ESMNGHVSVSNTGTMLNLPQAMTSTASVPPPPQYPLHVGNHIAVPSTTTGSYQYPMSPES
WISSPSSYVSHQSPMSSACSPMSSVCSPMHATSPYPCSPHMQEVSGFISSEVTSAPSNIP
LSNGNLMSPGSQTNGIISPAYMGQPLPSPGMVNRQNSPPTQRQTRDTNMTELEKVLRGCS
SNASIFTTKNNCKESQNSTLLQKMLTGQLTGESYRAMEKQRKKTRHYPF
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgtacaaaaaaataaagatgttgtcagtacaggacaacaatcagctgattgaa
aatgtggagcacttagagaagatggaaaccggcgtcaagggccggagactaacaagagca
gagaagtcgagggtagcggcccaaggccggcgagataaagaggcggtagaaatggccaac
ctgatagacttgcttccctatgaaccgtcagccttgagtaaaatggacaagaactcatta
ctggaactcattctgaattatttacggatgaagcaatacttagaaaaggaaatggccaaa
ctgtcccttcaggacgtggagccaaccactgaggaaaaatctccaatgccagttgtgaag
aaaaatggtacacaccaccttgtcctaaatggtgtggagcagtgtaaggtggaggagagt
cagctgatgctggaggccatgaatggattcctgttgctgctggaccgcaagaagaagatc
ctgtatgtgtctgatggagtggccacgcacctaggcattgatcaggttcaactgctgggt
aaaaaggtgaccacactcatccaccccagtgatataccagagctaaagaaacagtttaat
ctcaaaccatgtgaaatgcattgctcttgccctgtcaacatggataatagtgacaagcac
gtcccacacctggatgacaatagagtgttttacctcagaatgaagtgtgtcttaaagaaa
aacggcattagaacaaagcaatcgggatttgtgcttatgcaatgttctggacgattgaag
atgcgagcgactgctagtcgtgccaacagttactctgtggacggactgatctgcatttgc
cggcccatgcagaccaactctgtgatggagatccgtctggacggcagcatgttcatcagt
cgccacgacctcggcatgaagttcacattctgtgacccaaggattgctactttaattgga
tatgaccccgaggaggtgattgggaagacagcatatcagtttcataatccactcgatgcc
aaattagttggagactgccaccaaaaattaattgtgaaaggttcatcagtgagtaattac
taccgctttattgggaaaaattgccagtgggtttggatgcaaacaagagcaaccataatt
tacaacaccagtaatgttccacagtatatagtctgcatgaattacatcatcagtgaggag
gaaggggaacagttcctcaggatgcagcagggtcacattctacagtctctggacggggct
caggccatagaaccagtcaaaagctctaagtcggaggaccagcacagtgacaatggctac
tggagcagtaacagtccctactcaagtcaccaccccagcccgggctccaccgacggaccc
accgcaggatccacagaaaatctgtcaactgggaacgagtttccaactggagtgttccaa
caagtcgtggacacgatcaactcgcacagcagccctccagaggaagtgctgaaaatactg
gaagagattgaaaaagaagggcgaaagcgttcaccaggaaatactactccatattccaaa
acctttactgcaagtgctatggacactgtgacaccgggaaatcaaaccccatcctaccaa
aaccttctggacagtgagccacattccataaaaagtaaccatatagctaaccttccaaca
acatcagaacacaatgcaatttgtgaaaataattccacagttccaagccatggtttaatg
aatgtccaaatcgctgcccttaattcaacagactttgcacctggctgtgctgtgacagag
gccttaccccaggagataacagacttctgtatgcagtactgtaactctatggcagaccag
caagcccaacaagtcctctcagaacttggtcaaaatagtttcggggcagagtttgaacaa
ttcgaaagtgagagtgaaatgaatggtatgaaccactgtgacctgactttgaacactcca
gagtcaatgaatggacatgtgtcagtgtctaacactggcaccatgttgaacttaccacag
gcaatgacctccactgcatcagtgcccccacctccacagtaccccctccatgttgggaac
cacattgcggtgcccagtaccaccactggctcttatcaatacccgatgtcgcccgagtcc
tggatctcctcccctagctcctatgtctctcaccaatcccctatgtcatctgcttgttca
ccaatgtcttctgtctgttcaccaatgcatgccacttcaccgtacccctgcagtccgcac
atgcaggaagtgtccggctttatcagctccgaagtaacaagtgcaccttcaaacattcca
ctctcaaacggcaacttgatgtcaccaggctctcaaacaaatggaataatatctccagca
tacatgggtcaacctctgccctctccagggatggtcaatcgacagaattctcctccaact
cagcgacaaacaagggatactaacatgactgagttagaaaaagtgctgcgtgggtgttcc
tcgaatgcgagcatatttaccacaaaaaacaactgtaaggaatcccagaattccacgctt
ctacagaagatgttgactggtcagttaactggagagtcctaccgtgcaatggagaaacaa
agaaagaagacgcgtcattatccattttga
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