Magallana gigas (Pacific oyster): 105343101
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Entry
105343101 CDS
T03920
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105343101
09124 Replication and repair
03420 Nucleotide excision repair
105343101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105343101
03400 DNA repair and recombination proteins [BR:
crg03400
]
105343101
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105343101
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105343101
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105343101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
105343101
NCBI-ProteinID:
XP_065925022
UniProt:
A0A8W8IHF9
LinkDB
All DBs
Position
8:complement(39258404..39278047)
Genome browser
AA seq
1177 aa
AA seq
DB search
MYNQEEEMVYEADDDGDEITADLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDSPQIDLQAEAQHTSGIVETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNL
TYSAPLYVDITKTVVKEGEDPVETQHQKTFIGKIPIMLRSTYCLLYNLMDRDLTELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFQQKDSKYAFKTEIRSCLEHSSRPTSTLWVN
MMARGGGGAKKSAIGQRIIGILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCE
TKKAYFLGYMVHRLLLAAIGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLY
AQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLARPRQLHNTQWGMICPAETPEGSAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEVSPSAIQDATKIFVNGCWVGIHRDPEQLMNTLRKLRREMDIIV
SEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVA
SGVVEYIDPLEEESIMLAMTPDDLSDKDVQYCSTYTHCEIHPAMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGINS
IVAIASYTGYNQEDSVIINASAIERGFFRSFFFRSYKDSESKKGLDQEEIFEKPTRENVQ
GMRQAVYDKLDEDGIISPGIRVSGDDVLIGKTLTLPANEDELEGTTKRFTKRDASVFMRR
SETGIIDQVMITLNQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFTC
EGITPDIIINPHAVPSRMTIGHLIECLQGKVAANKGEIGDATPFNDAVNVQKVSNLLHQY
GYHQRGNEVLFNGFTGRKLNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGR
ARDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNFCGLIAIANLRNQTFECR
GCKNKTQISQIRIPYACKLLFQELMSMSIAPRMMVMG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtataatcaagaagaagagatggtatatgaggcggacgatgacggagatgaaatcacc
gccgacctttggcaggaagcatgttggattgtcatcagctcatactttgatgagaaaggt
ctggtgcggcaacagttggactcgttcgacgagtttattcagatgtcggtacagagaatt
gtagaggactccccacaaatcgacttgcaagcggaggcacaacatacatcagggattgtt
gaaacaccaccaagatacctgttgaaatttgaacaaatttacctgtccaagcccacgcat
tgggaaaaagacggagctcccagtcccatgatgccaaacgaggccagactccgaaatctc
acgtactcagctcctctctatgtggacatcacaaagacagtggtaaaagaaggcgaggac
ccagttgaaacgcagcatcaaaagaccttcattggaaaaatacccatcatgcttcggtcg
acatactgtttattatacaacctaatggaccgtgatttgacagagttaaacgagtgccct
ttggaccctggagggtatttcattataaacgggtcagagaaagttctcattgcgcaggag
aagatggctacaaatacagtttatgtctttcaacaaaaggactctaaatatgccttcaaa
acagagatcaggtcatgtctggagcattcctcaagaccgaccagtaccctgtgggtcaac
atgatggccagagggggagggggagccaagaagagcgccatcggacagaggatcatcggc
attcttccatacatcaagcaggagatccccatcatcattgtgttcagagcccttggcttc
gtgtcagacagagacatcttggagcacatcatttacgattttgatgatccagaaatgatg
gaaatggtgaaaccctctcttgatgaagcctttgtgattcaggagcaaaatgtggcctta
aactttattgggtcgagaggggctcggccaggtgtgaccaaggagaagcgaatcaaatat
gccagggagatcctgcagaaggaaatgttgcctcacgtgggagtgagtgatttctgtgag
accaagaaggcttacttcttaggatacatggtgcatcgattactactggctgctattggt
cgaagagaagtggacgacagagatcattatggcaacaagcgcctggatttagctggtcct
ctcttggccttcttattcagagggttattccgtaacttgatgaaggaggttaggctgtat
gcccagaagttcattgacagagggaaagacttcaacctggagctggccatcaagaccagg
atcatcacggacggactcaagtactccctggccacaggcaactggggggaccagaaaaag
gcccatcaggcccgggcaggggtgtcacaggtgttgaacaggttgacatttgcttcaaca
ctatcacatctgagaagattgaactcaccgataggtcgagacggaaagctcgctcgaccg
cgtcagcttcacaacactcagtggggcatgatatgtcccgcagaaaccccagagggaagt
gctgtagggctggtgaagaacttggcattgatggcctatatatctgtcggttctcagccg
tcccccattctggagttcttggaggagtggagcatggaaaacctagaggaggtgtccccg
tcagccattcaagatgccacaaaaatatttgtgaatggttgttgggtaggaattcatcga
gaccctgaacagcttatgaacactctccgtaaactgcgacgtgaaatggacatcattgtc
tcagaggtgtcaatgatcagagatataagagacagagaaattcgtatctataccgatgct
ggcagaatttgccgtccactgctgattgtagaaaaccagaaactgctactgaaacagagt
cacattaaacagttaaagcagcgagaatacaacaactacagttggcaggacttggtagcc
agtggggtggttgaatacattgaccccctggaggaggaatccatcatgctggccatgacc
ccggacgacctctcagataaggatgtccagtactgctccacctacacccactgtgagatc
caccctgccatgatcctgggtgtgtgtgcctccatcattccattccccgatcataaccag
tcaccccgtaacacctaccagtctgctatgggtaaacaagctatgggggtgtacatcacc
aacttccacgtgcgtatggacaccctggctcacggcctgctctacccacagaaacccctg
gtcaccacccgctcaatggagtacctgcgattcagggagctccccgcaggtattaactcg
attgtggccatcgcgtcctacacaggatacaaccaggaagattcggtgatcatcaatgct
tcagccatcgagaggggcttcttcaggtcctttttcttccgatcttacaaagactcagaa
tcaaagaaaggattggaccaagaggaaatatttgagaaaccaactcgagagaatgtccaa
ggcatgagacaggctgtgtatgataaactggacgaggacggaattatctcccctggaatc
agagtgtcgggagacgacgttctgattgggaagactctcacactccccgccaacgaagat
gagctggagggtaccaccaaaaggttcaccaagcgtgacgcgagcgtgttcatgcggcgg
agcgagacaggtattattgaccaggtgatgattacactgaaccaagagggctacaagttc
tgtaagatccgtgtcaggaccgtcaagacgccgcagatcggcgacaagttcgctagtcgc
cacggacagaaaggaacctgtggtatcacctacagacaagaggacatgccctttacctgt
gaggggatcaccccagacatcattatcaacccccacgctgtccccagtcgtatgaccatc
ggtcacttgatcgagtgtctccagggaaaagtggccgccaacaagggcgagattggagat
gccacgccctttaatgacgccgtcaacgtacagaaagtctccaacctgctccatcagtac
ggatatcatcagcgaggaaacgaggtgctgttcaatggattcacgggcaggaagctgaac
gcccagattttcctgggccccacctactaccagcgactgaagcatatggtggacgacaaa
atccactctagagccagagggcctctacagatcctcaacagacagcccatggagggcagg
gctagagatggtggtttacgtttcggtgagatggagcgagattgtcagatagctcacggt
gctgcccagttcctgcgagagcgtctctttgaggcgtccgatccgtacagagtccatgtg
tgcaacttctgcggcctcatagccatagccaacctccgcaaccagacctttgaatgcaga
ggctgcaaaaacaagacacagatctcccagatccgtattccgtatgcctgcaagctcctc
ttccaggagctgatgtccatgagcattgctccccgtatgatggtcatgggatga
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integrated database retrieval system
