Magallana gigas (Pacific oyster): 105343171
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Entry
105343171 CDS
T03920
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crg03016
]
105343171
Enzymes [BR:
crg01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
105343171
Transfer RNA biogenesis [BR:
crg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
105343171
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
105343171
NCBI-ProteinID:
XP_011448723
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All DBs
Position
5:complement(53481475..53487860)
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AA seq
291 aa
AA seq
DB search
MCNMSATKPIKVYLQNDKPLIWSSTDAVKIREEWRIVGCLIGCLPRLPRQNNHLGLPLQL
TKEEVTLLLEKGAILLLNDATGLKEPSEKEREEFIEYREASYQSQVDLFRAERKKEIYQN
MANIIEGKKAKAQKEEKKDSSEATEPSEKEEDFSIDVDKVPIPPIPRKFSLVQIFTESPY
RLDQEIPAEWSHPESKQEQLRYHVYRDLWNQGFFLSNGSKFGGDFLVYPGDPSRYHSHYI
VICIPHDKPMSALDIVRMGRLGSNVRKTVLMCSQDCNQRISYISLQWSGIS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaacatgtcagctacaaaaccaatcaaagtttatttacaaaatgacaagccccta
atttggagttctacagatgctgtcaaaatacgagaggagtggaggattgttgggtgtctg
attggatgcttgcctcgactacccaggcaaaacaaccatcttggtttaccccttcaactt
actaaagaagaagttactctcttgcttgaaaaaggtgcaatattgcttctgaatgatgct
actggattaaaggaacctagtgaaaaggaacgagaggagtttattgagtacagggaagcc
agctaccaatcacaggtggatctgtttcgagcggagaggaagaaggaaatctaccaaaac
atggcaaacataatagaggggaaaaaggcaaaggctcaaaaggaagagaaaaaggactca
agtgaagcaacagagccatcggaaaaagaagaggacttcagtattgatgtagacaaagtg
cctatccctccaatacccagaaagttcagccttgtccagatatttaccgaatccccctat
cggctggatcaagaaattcctgctgagtggtcacatccagagagcaagcaggagcaactg
agatatcatgtgtacagagacttgtggaaccagggcttcttcctttcaaatggcagcaag
tttggaggagattttctggtttacccaggcgacccatctagatatcattctcattacata
gtaatttgcatcccacatgataaaccaatgtctgccctggacattgtgagaatgggaaga
cttggatccaatgtaaggaaaacagtgttaatgtgttcccaggactgcaatcaaaggatt
tcttatatatcactgcaatggagtgggatcagctga
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