Magallana gigas (Pacific oyster): 105343240
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Entry
105343240 CDS
T03920
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105343240
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105343240
Spliceosome [BR:
crg03041
]
Complex C
Other components
Complex C specific factors
105343240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
ABC_tran
nSTAND3
Cas3-like_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
105343240
NCBI-ProteinID:
XP_065935739
LinkDB
All DBs
Position
3:complement(38146614..38216917)
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AA seq
703 aa
AA seq
DB search
MSSFAPKFWKPGTDAPGQAIKEERTTTTEEGGTTVVYNQNVSLSIEQQRQKLPVFKLRNH
ILYLVENYQTVVIVGETGCGKSTQIPQYLLEAGWGAEGHVIGVTQPRRVAAVTVATRVAE
ERGALLGDEVGYTIRFDDTSDPTRTRVKFLTDGMMIREIMEDPLLKKYSVVMLDEAHERT
LNTDLIMGLLRKIQKKREDLRLIVTSATLNAEEMKDFFNTSSSENSNKDTAAILSVEGRN
FPVDIHYTIDPVPDYLKATVDTITRIHHQEKEGDILAFLTGQDEVETVTRQLIDVAKECI
RTQAAMKMKVLPMYGSLPASEQMKVFERCGRTTRKIVVATNIAETSITIPGIVCIVDCGF
VKLKAYNPKSGVESLVTIPVSKSSAEQRAGRAGRVRAGKAYRLYTEEGYDGLESSTVPEM
QRSDLAPVILQMKALGVSNIVRFNFLSPPPAQNMIRGLELLYALQALDDNGNLTSPLGLQ
MAEFPLTPMFSKMLLASGEFQCSEEAVIIAAMTQIQNVFITPMGEKSAANRAKRNFAVEE
GDHVSLLNVFRAFIKYKKNSKWCKQNFLNYKGLCRAVEIQHQLQRLLKKFKVPLVSCQED
VCLIRRCITSGFFANAAYLHYTGVYRTVRDDHELHIHPTSVLTFTDPPKWVVFNDIVQTN
KDYMRDISVIEPDWLCELAPHFYQFGTEREIAYKRAKRDEQGR
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgtttgcaccaaagttctggaagccgggaactgatgctcctggtcaggctatt
aaggaagagagaacaactacaacagaggaaggggggacaactgtagtgtacaaccagaat
gtctctctgtcaatagagcaacagaggcagaagcttccagtgtttaagttgaggaaccat
atcctttatttggtggaaaattaccagacagtggtcattgttggagaaacaggctgtgga
aaatccacccagatacctcaatatttgctggaggctggatggggagcagaaggtcatgtg
ataggagtcactcaaccaagacgagtggcagcagtcacagttgcaacaagagtggctgag
gagaggggggctctattgggggatgaagtggggtacaccataagatttgatgacacctca
gatccaactcgtacccgtgtcaaatttttaacagacgggatgatgattagagaaataatg
gaggatcctttgttgaagaaatacagtgttgtgatgttggatgaggctcatgaaaggaca
ctcaacacagatttgatcatgggacttcttcgaaagattcagaagaaaagagaggacctc
cggctgattgtcacatcagcaacattgaatgctgaggagatgaaagattttttcaatacc
agctcatctgaaaactcaaataaagacactgctgctattctgagtgtggagggcagaaac
tttcctgtagatatccattataccattgatcctgtacctgactacttgaaagcgacagtg
gacaccataactagaattcatcaccaagagaaagagggagacattctagcatttctaaca
ggacaggatgaagtggaaacagtcacaaggcaattgatagatgtagccaaagaatgtatc
aggacacaagctgcaatgaagatgaaagttttacccatgtatggtagtctaccagcatca
gagcagatgaaagtgtttgaaagatgtggcagaacgacaaggaaaatagtggtggctaca
aacatagcagagacctccattaccatcccaggaattgtgtgcattgtagattgtggattt
gtgaaattaaaggcatataatccaaagtcgggtgttgaatctttggtgaccattcctgtg
tccaagtcgtcagctgagcagagggcagggagagcaggcagggtgagggcagggaaggct
taccgcctctacacagaggaaggttacgacggacttgaatcatccactgtgccagaaatg
cagcgatcagacctagcacctgtgatactccagatgaaggccctaggggtgtccaacatt
gtccgatttaacttcttatcgcctcctccagctcagaacatgatcagaggtctagaattg
ctgtatgccctgcaagcattagatgacaatggtaacctaacatctccacttggacttcag
atggcagaatttcctttgacaccaatgttctcaaagatgttattggcctcaggcgaattt
cagtgttcagaggaggcagtgatcatagcagccatgacacagatccagaatgtgtttata
actccaatgggcgagaagtctgcagctaatcgtgccaagagaaattttgcagtggaggaa
ggtgaccatgttagtttactaaatgtgttccgagctttcatcaagtataagaagaattcc
aagtggtgcaaacagaatttcctgaactataaagggctttgtcgtgctgttgaaatccaa
catcaactgcaacgtttgctgaagaagttcaaggtgccactggtatcctgtcaggaggat
gtgtgcctaatcagacgctgtataacctcgggcttttttgccaacgctgcgtatctacac
tacacgggggtgtataggacagtaagagatgaccacgaacttcacatccacccaacatct
gtactcacattcactgacccacccaaatgggtggtgtttaatgatattgtccagacaaat
aaggattacatgagggacatctcggtgattgaaccagactggttgtgtgagctggctccc
catttctaccagtttggaaccgaaagagaaatagcttacaaacgtgccaaaagagatgag
caaggaagatga
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