Magallana gigas (Pacific oyster): 105343386
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Entry
105343386 CDS
T03920
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crg03009
]
105343386
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105343386
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
Pre-60S particles
Helicases
105343386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
Motif
Other DBs
NCBI-GeneID:
105343386
NCBI-ProteinID:
XP_034334375
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All DBs
Position
5:complement(22683797..22695325)
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AA seq
884 aa
AA seq
DB search
MTKWRKKRLDQQNHESKTQTFKSEKRKTKSTKLKPNGKNDNTNRACDVKNKKAVKQKVER
KYSKGNKRGSFEEDNDEMEVVGQKHLQQIFIPDKEDADSDSSQELQDTRKWLTEQNRKKK
KSGGFQSMGLSHGVYKGVLRKGYKIPTPIQRKTVPLIMEGKDVVAMARTGSGKTAAFLIP
MFEKLKTHTAKSGARGLILSPTRELALQTLKFTKELGKYTGLRAAVVLGGDKMDDQFAAL
HENPDIIIATPGRLMHVLVEMEKKLKSVEYVVFDEADRLFEMGFQEQLHEIIHRLPESRQ
TVLFSATLPKLLVEFAKAGLHDPTLLRLDVETKLSEQLKQSFFRCREEDKPAILLYILKH
VIDLDQLTVVFAATKHHVEYLHMILTYAGIDSTYIYSSLDPSARKINVAKFQHKKVKVLI
VTDLAARGIDIPLLDNVINVNFPAKSKLFVHRVGRVARAGREGYAYSLVAQDEVPFLLDL
YIFLGRSLTIASQLKNVEDKDGVLGDVPQTVVDEEEEQLRLWHKDHIDLINMKKVVGNAQ
KKYLRSRPLPAKESIKRYKQIQSTDNIGLHPVFAKECSTEEQQKNELLNALKAYKGHSTI
FETNTSSKNRSFDVMKHKRAFHQTVIQKKTKQVTDLKDAESDDSDRGETEQLMADEENVK
ETFRTVIGGKRKANNKLFDPQRKKKRKQESIRDEENYLHYRPKDFQSELGLSLGTSFDKE
ATGAVLDLRDEINKSKPMSNKRWDRKKKKFVTTNDNAAGKKKIRTESGAMISASYKSRAY
KDWLNKNKMANANDSGDEEEERETNTGNQDNSYRLKVIGTKRRNWHTKLKEEEDQKRNRT
ELKHKEEILKQRKIKAKKQAFQNHRQKQRQSRQKFKVQKSRKKH
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtggagaaagaaaagattagatcaacaaaatcatgaaagtaaaactcaaact
tttaaatctgaaaagagaaagaccaaatcgacgaaattgaaacctaatggcaaaaatgat
aacactaacagagcatgtgatgtgaaaaataaaaaggctgtcaaacagaaggtcgagagg
aagtattcaaagggtaacaagcgtggttcttttgaggaggataatgatgaaatggaagtt
gttggtcaaaaacatctgcaacaaatcttcataccggacaaagaagatgcagactctgac
tccagccaagagcttcaggatactagaaaatggttgacagaacagaacaggaaaaagaag
aaatctggaggatttcaatcaatgggtttgtctcatggagtttataagggggtgttgaga
aaaggatacaaaatacctactcccatacaaagaaagactgtacctttgattatggaagga
aaagatgttgttgctatggctagaactggaagtggaaaaactgcagcttttctaattcca
atgtttgaaaaactcaaaacacacactgctaagtctggggccagaggtcttattttatcc
cctactcgagaattagcattacagactctaaaatttaccaaagagctgggaaaatataca
ggactaagagcagcagtggttttaggaggagacaagatggatgaccagtttgctgcactt
catgaaaaccctgatataatcatagccacacctggtcgtttaatgcacgtcttagtggag
atggaaaagaaactcaaatctgtggagtatgtggtctttgacgaggcagacaggctattt
gagatgggatttcaagagcaattgcatgagataattcacaggctgcctgagtccagacaa
acagttttgttctcggctactctgccaaagctactggtagagtttgctaaagctggactt
catgacccaacactgttaaggctggatgtggaaaccaaacttagtgagcagctgaagcaa
tcctttttccgatgccgtgaggaggacaaaccagccattttgctttatattctcaagcat
gtcattgacttagatcagctaactgttgtatttgctgcgacgaagcatcatgtggaatat
cttcatatgatattgacatatgctgggatagattctacttacatctatagctcgctagac
ccctctgctcgtaaaatcaatgtagcaaagtttcaacacaagaaagtgaaggttctcata
gtgactgacctcgctgcccgtggaatcgacatccctctgctggacaatgtcataaatgtc
aacttcccagccaagtccaagctctttgtgcacagagtgggtcgtgttgcccgggctggc
agggaggggtacgcctattctctggtggcccaggatgaggtgcctttcctcctggattta
tacatctttttagggagatccctaactattgcctcacagcttaaaaatgtagaagacaag
gacggggtcctgggagatgttccacagacagtggttgatgaagaggaggaacagctcagg
ctctggcacaaggatcatattgatttgataaacatgaaaaaagttgttggaaatgcccaa
aagaaatacctgaggtctcggcctctcccggccaaggagtccattaaacgctacaaacag
atccagtctacggataacattggattgcaccctgtgtttgcaaaagagtgcagtacggaa
gaacagcagaagaatgagttattaaatgcattgaaggcatataaagggcactcaacaatt
ttcgaaacaaatacatcaagcaaaaacaggagctttgatgtgatgaaacataagagagcc
ttccatcaaacagtcatccaaaagaagacgaagcaggtgacagacttgaaggatgcagaa
tcagacgacagtgatagaggggaaacagagcagctgatggctgatgaagaaaatgtcaag
gaaacatttcgaacagtcattggaggaaaaagaaaagccaataacaagttgtttgatccc
cagaggaaaaagaaacgcaagcaggagagtataagagatgaagaaaactaccttcactat
cgtcccaaagacttccagtctgaactcggattaagcttaggaacttcctttgacaaagaa
gcgacaggagctgtgttagacttgcgagatgagattaataaatctaaacccatgtcaaac
aagaggtgggacagaaaaaagaaaaagtttgtcacaaccaatgacaatgcagctggcaag
aaaaagatcagaacagagagtggggctatgatatcagcttcctataaatctcgtgcttac
aaagactggttaaacaaaaacaaaatggcaaatgccaatgacagtggagatgaagaggaa
gaacgtgaaactaacactggtaaccaagacaacagctacaggttaaaggtcattggaacc
aagcgaagaaactggcatacaaaactcaaagaggaagaagaccagaagagaaatcggaca
gagctgaagcacaaggaggaaatcctcaagcagcggaaaatcaaagccaagaaacaagct
ttccaaaatcatcgacagaaacagaggcagtcgcgtcagaaatttaaagttcaaaaatcc
agaaagaaacactga
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