Magallana gigas (Pacific oyster): 105343416
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Entry
105343416 CDS
T03920
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105343416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105343416
Spliceosome [BR:
crg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105343416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_Vps41
Ge1_WD40
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_NWD2_C
WD40_like
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_WDR11_1st
R2K_3
Motif
Other DBs
NCBI-GeneID:
105343416
NCBI-ProteinID:
XP_011449094
UniProt:
K1QQR6
LinkDB
All DBs
Position
2:43915439..43917264
Genome browser
AA seq
521 aa
AA seq
DB search
MDFSDDDEDLNVPQVKRAIVYGSLEEKEKLRLAANSSSGSLASDAIKAGKAAGNINITEG
GSYDIAERDPNEGQEELIATLEKRKKARQIQVSTDDFEVKANLRQLGEPICLFGEGPAER
RERLRRTLAELGSEATGAILRKGEQSSEKKTKEEENVTWYHEGTSALKEARIWIAKYSIP
RAKERIKQQKEEKLLPTAKKNAQLQDLHKRVRAVTNECSQIGDVRPLSYCEFSPNGKILA
VASWSGLCKLWSVPDCQLIRQLRGHNCNVGAIVFHPKATLTMEDNACCMASCSQDGAVKL
WNLVSDEPVADIEGHSPYRVSHLKYHPSGRFLGTCCFDNSWRLWDLEVQEEILHQEGHSK
PVYDIAFQGDGALAATGGLDAFGRVWDLRTGRCIMFLEGHIQSVFSIDFAADGYHVATGS
EDNSVKIWDLRQRKCMYTIPAHKNLVSKVKFQPNHGNYLVSASYDCTAKIWAHPTWAPLK
TLAGHEGKVMGTDISPDLKYIATVSYDRTFKLWTTEMQGGI
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcagacgatgacgaagaccttaatgttccccaggtgaagagggcgattgtt
tatgggagcttagaggagaaggaaaagcttagacttgcagctaatagttcatctggctcc
ttagcttcagatgctataaaagccggcaaagctgcaggtaatatcaacatcacagaagga
ggttcttacgatattgcagagagggacccaaacgaaggacaagaggaattgatagctaca
cttgagaaaaggaagaaagcaagacagatccaggtgtcgacagacgactttgaagttaag
gctaatctcagacaactaggagagccgatatgtttgtttggagaaggtccagctgagaga
agagagcgtctcagaagaacattagctgaattgggatccgaagccacaggggcgatatta
aggaagggagaacagtcatctgaaaagaaaacaaaagaagaagagaatgtgacatggtat
catgaaggtacttccgcacttaaagaggcaaggatatggattgcaaaatattctattcca
cgggcaaaagaaagaataaaacaacaaaaagaagagaaactcttaccaacagccaagaaa
aatgcccagcttcaagacctccacaagagagttcgagcggtcaccaatgaatgcagtcag
attggagatgtccgacctctttcatattgtgaatttagtccaaatggtaaaatccttgct
gtagcttcatggtctggtttgtgtaagctatggtcagttcctgattgtcagcttatcaga
cagctaaggggacataactgcaatgtaggcgccattgtattccatccgaaagctacattg
acaatggaggataatgcatgctgcatggcctcctgtagtcaagacggagcagtgaaactt
tggaacctcgtcagcgatgagccggtggcagacattgagggccacagtccatacagagtg
tcccacttgaagtatcatccctcgggtcgattccttgggacctgctgttttgacaactct
tggagactgtgggatttagaagtccaagaagaaattcttcatcaggaagggcacagtaag
ccagtttatgacattgccttccaaggtgatggtgccttagcagcaacaggaggtctagat
gcatttggaagagtgtgggatcttaggacggggagatgcatcatgtttttggaggggcat
attcaatctgtattttccattgactttgcagctgacggatatcatgttgcaacagggagt
gaggataactcggtgaaaatctgggacttaaggcaaaggaagtgcatgtacactattcct
gctcataaaaatttagtgagcaaagtgaaattccaaccaaatcatggtaactatttagtg
agtgcatcctatgattgtacagcaaagatatgggctcatccaacatgggctccattgaaa
acgctggccggacatgaggggaaagtaatgggaacagacatttctcctgacctgaagtac
attgctacagtgtcatatgacagaacttttaagttgtggaccacagaaatgcagggtgga
atttaa
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integrated database retrieval system
