Magallana gigas (Pacific oyster): 105343604
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Entry
105343604 CDS
T03920
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105343604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105343604
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105343604
mRNA degradation factors
5'-3' decay
Decapping complex
105343604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF7527
Motif
Other DBs
NCBI-GeneID:
105343604
NCBI-ProteinID:
XP_011449324
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All DBs
Position
9:complement(41858053..41879914)
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AA seq
900 aa
AA seq
DB search
MEDTLSPCNPALGAGYHENNLMEAPEEEEDIDLMNDETFGGDIDEDFDWEEQHEKLSEVI
EVGDKVLYGRPSRGSEYQNNYASQEEFMEQSIRQLVVEDEEIDDPAILNVSKNCPIPKKC
QNLDDLFGPSSPPALLDTEHLVSPTSRNIWGSPVKEAYMPPTVNNLQTLFEFAKAASGTS
HAKGAPGRTLEELEQQIVPGSKGHAMTAEDLERHLRGEGQKPPPLPEPHLHHPPPGFLPG
SHGPRNQTPQRMPPGYGPPYMPMMEGRRSPLGPGPYPPRAGEGPPGPTPPGPIPPHLLNG
RRSPLDSVPTTPQNNRSSPVLLHRLSPLGPGFGHTSPSPGRVSPISVVLRGSPSPPPGTP
QSSILSAYARGALQSLLGNRMTTPPIGIPRPMLRGPPPPHSPYNSPGPRQSPHGGPFGPP
HGSPYGPPPPGSYPPPHSSPGGPRPPHPMGHSDPRRGRGRGHFRGHSRGGYMNMDVREGY
SEGHDPNKYDQIHHQGNRDHRRDYQDNRREYDRRRYYHYNPDEDRKRSVDAYAGLMTQKE
KDWIIKIQLIQLQTENPYLDDFYYTTYTLKKKAEERLKRQQNGALDDKDSELNLIIPAMA
KLETKPYKPAQFEGSLGRLTTSSVHNPRQIIDVRSDNKPHSEEGEPKNVSKELRRSRQLL
MEIENGYNLLLDVDDIEKKILALPEEARKPLFEDRKNMLTDLYKYLLCPGNNDHFLSIMS
IRKGRKLVARVLPLLEKSKAENMVQLLLRNMAYLIKKDQGDEGLMCLHDSVIRVIDTCDL
QRLVEFATELKESRQNQSKTTAVAIQNKFGSSLVCTLLHRGEVLHANTSPLDMDNQLESL
WCQFVHEFAGILAVVPTESLVHPKQHHASITEHFDRLLNKKLIAVIEDKVKLFTEPERAA
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacgttatcaccatgcaaccctgccctaggggcagggtatcatgaaaacaat
ttgatggaagcacccgaggaggaagaggatattgatctaatgaatgatgagacatttggt
ggtgacatcgatgaggactttgattgggaagagcaacatgaaaaactatcagaggttatc
gaagtcggcgacaaagttctgtatggacggccatcgagaggttctgaataccaaaacaac
tatgccagtcaagaggagttcatggaacagagtatacggcagcttgttgtggaggacgaa
gaaattgacgaccccgccatcctcaatgtcagcaaaaactgcccaatacccaaaaagtgt
cagaacctggacgacctgtttggcccctcctcccctccagcactactggacacggagcac
ctggtgtccccgaccagcagaaacatctgggggtccccggtgaaagaggcctatatgccc
cccacggtcaacaacctccagactctgtttgagtttgccaaggcagcatcgggcacctcc
catgccaaaggtgccccaggaaggactttggaagagctggaacagcagatagttccgggg
tcaaaaggtcatgcgatgacagcagaggacctggagcgacatttgaggggtgagggtcag
aaaccgccccctcttcctgagcctcatctacatcaccccccaccaggatttctacctggg
tcacatggcccaagaaaccagactccacagcgaatgcccccgggatatggtccaccgtac
atgccaatgatggaaggccggcgctcccccctgggtccgggaccctaccctccccgggct
ggtgagggtccccctggacccacacctcctggtccgattccacctcacctactcaatggt
aggagatccccactagattctgtgcccaccacccctcagaataatagatcctcccctgtg
ttgttgcataggctttctccactgggtccaggatttggtcacacttcaccatcgccagga
agagtgtcccccatatctgttgtattgagggggtcaccctcaccccctcccggaaccccc
cagagttctatattatctgcctatgcacgaggggctttacaaagtcttctggggaatcga
atgaccacgcctcccattggaatccccaggcccatgcttagaggaccccctccccctcac
agtccgtataacagcccagggcccagacagagcccgcatggaggcccctttggaccccca
cacggcagtccgtacggcccacctcctccgggatcctacccaccccctcacagcagccca
gggggccctagaccacctcacccaatgggtcactcagatcccaggagaggccggggaagg
ggccatttccgagggcatagtcgtggaggttacatgaacatggatgtcagggaaggttac
tcagaaggtcacgacccaaacaaatatgatcaaattcatcaccagggcaaccgagatcat
cgccgtgactaccaggataaccggcgagagtacgatcgacggagatattaccactacaat
ccggacgaagacaggaaacgatcggtggatgcctacgctggactcatgacccagaaagag
aaagactggattatcaaaatccagctcatccagctccagacggagaatccttatctggat
gacttttactacactacttacaccctaaagaagaaggctgaggaacgcctcaagagacag
cagaatggggcgttagacgacaaggactcagagctgaacctcatcataccagccatggct
aaactggagaccaagccctacaaaccagctcagtttgaaggctctctgggcagattaacc
acctcaagtgttcacaatcccaggcaaattattgacgtcaggagtgacaacaagccacac
tcagaggaaggagagcccaagaatgtctccaaggagctgagacgcagcaggcagctgttg
atggagatagagaatggttataatcttctcttagatgtggatgacatcgaaaagaaaata
ttagcattgccagaggaagcaaggaaaccattatttgaagacaggaagaacatgctgaca
gatctctataaatatttactgtgcccaggaaacaatgatcatttcttgtccatcatgtca
atccgcaaagggaggaaactggtggctcgggtcctaccacttctggaaaagagcaaggca
gagaatatggtacagttactgctgaggaacatggcttatctgatcaaaaaggatcaagga
gacgagggtctgatgtgtctccacgactcagtgattcgtgtgattgacacgtgtgacctc
cagcgtctggttgagtttgccacggagctgaaggaatcccgacaaaaccagtcaaagacc
actgctgtcgccatacagaacaagttcggcagctctttggtgtgtactctgcttcaccga
ggtgaagttctccatgccaacacctcacctttagacatggacaatcagctggaatcacta
tggtgccagtttgtccacgaattcgcaggaattcttgcggtggtgccaacggaatctctt
gttcacccaaaacagcaccacgcctccataacggagcactttgatcgactcctcaacaaa
aaactgattgctgtcatcgaagacaaggttaaactcttcactgaaccagaacgggctgcg
tga
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