Magallana gigas (Pacific oyster): 105343804
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Entry
105343804 CDS
T03920
Name
(RefSeq) ATP-dependent RNA helicase DDX50 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crg03009
]
105343804
03036 Chromosome and associated proteins [BR:
crg03036
]
105343804
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105343804
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
Pre-60S particles
Helicases
105343804
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
105343804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
105343804
NCBI-ProteinID:
XP_034313147
LinkDB
All DBs
Position
7:6284440..6304982
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AA seq
777 aa
AA seq
DB search
MVKVKVEDTKEEPVPKVKTQGKGKISKDKKKKDKTSVQDDKKKSKKDPKVTKSEENEEAT
VTKEKKKSKKKPELAENGEKERATDIKEKKKSKKDKTKADKSEEMTDISEDSVVKEKKKS
KKDKTSSSNGHSVTEEADTTENVNGTTKNPEETKNGAEVSEKTEAEILGDFSNFRLSDVT
VEKLKKRNVNYLFPIQYKTFDHVYNGEDVIGQARTGTGKTLSFALPLVEILQKNKTPRIR
NCPKVIAMVPTRELAKQVSDEFESISDGLSVACFYGGTPYEKQIRAIRSGIDVLVGTPGR
IKDHIEKGNLDFKGVRHVVLDEVDRMLDMGFAEDVETIISSAYNNGSGENPQTLLFSATL
PSWVHDTARKYMNKDKLAKVSLVNSQENRTSTTVQHLAIRSSFWDRPSVIGDVLQVYSGK
NGRAIIFNETKKEADNLSCSEYIKQDAHVLHGDIPQEKRETVLKSFREGKFNVLLTTDVA
ARGLDIPEVDLVIQCNPPEDVDSYIHRSGRTGRAGKNGVCICFYKPEEEMKLANVEYRAK
IKFKKVSGPTKEDIISASVEDAVRSIEGVQSETLDYFRSSAKELIAERGAEDALAAALAL
ISGSTKITSRSMLSSKEGFTTFYLKTNTEIQRNNYVYRALERCLPKDLVEKIRWLTLCKD
RMGAVFDFPSECESQVLNYWTDGKFDTLCKATELPELQEKERPFSPGARGGRGRGSFGGR
GRDFSSYNNRSRGGFGGRGSFGGRGGFGGRGSFGGRGGFKRSGDFGEASPQNKKIRF
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaggtaaaggtagaagatacaaaagaggaaccggtaccaaaagttaaaacgcag
ggcaaaggaaagatttcaaaagacaagaagaaaaaggacaaaaccagtgtacaggatgac
aaaaagaaatctaagaaagatccgaaagtcacaaagagtgaagaaaatgaagaagcaaca
gtaaccaaagagaaaaagaaatctaaaaagaaacctgaactagcagaaaatggagagaaa
gaaagagcaacagatatcaaagagaaaaagaaatctaagaaggacaagacaaaagctgac
aaatctgaagaaatgacagacatatcagaagacagtgtagttaaagagaaaaagaaatca
aagaaagacaaaacatcatcgtctaatggccacagtgtgacagaggaagcagataccact
gaaaatgtcaatggtacaactaaaaatccggaggagaccaaaaatggtgcagaggtgtct
gaaaaaacagaggcagagatcctgggggatttctcaaacttcagattatcagatgtcact
gtggaaaaactcaagaagcgaaatgtgaactatttgtttcccatacaatacaagacattt
gatcatgtctacaatggagaagatgtaattggtcaagcacgtactggtactgggaaaaca
ctttcatttgcattgccgttggtagaaattctgcagaagaataaaaccccaagaattcgc
aactgtccaaaggtcattgcaatggtaccaactcgtgaacttgcaaagcaagtttctgat
gagtttgagtctattagtgatggactcagtgtggcctgtttctatgggggaactccatat
gaaaagcaaataagagccataaggtcagggatcgatgttctggtgggaaccccagggcgt
atcaaagatcacatagagaagggtaaccttgacttcaaaggggtgcggcacgtggtcctg
gatgaggtggatagaatgctggacatggggttcgcagaagacgtggagactatcatatca
tccgcctataataacggaagtggagaaaacccacagacactgttgttttcagccacactt
ccttcttgggttcacgacacggccagaaaatacatgaacaaagataagctggctaaggtc
tccctggtcaacagtcaggagaaccggacatccaccacagtacagcatttggcgattcga
agcagtttctgggatcgtccctcggtgattggtgatgtgcttcaggtttacagtggcaaa
aatggcagagcgatcatatttaacgagaccaagaaagaggcagacaacctatcgtgtagt
gaatacataaagcaggacgctcacgtattacacggagacattccacaagaaaagagggaa
acggtcctcaagagtttcagagaagggaagtttaacgtgctgttgacgacagacgtggca
gcgcgaggactggacattccagaagtggatctggtcattcagtgtaatccgcctgaggac
gtcgactcttacatccaccgctccggccgaacaggcagggccgggaaaaacggagtctgc
atctgcttctacaaaccagaagaagagatgaaattagccaacgtcgagtacagagcaaaa
atcaagttcaagaaagtgtctggaccaaccaaggaagacataatcagtgcctctgtagag
gatgcagtgagatctatagaaggtgtgcagtctgagacattggattatttccggtcttcg
gcaaaggaactgattgctgagcgcggagcagaggatgctttggctgctgctctcgcgttg
atatcaggatccacaaaaatcacctcccgctccatgctctcctcaaaagagggttttaca
acgttttatttgaaaacgaacacggagatacagcgcaacaactacgtgtaccgggccctg
gagaggtgtctacccaaggacctggtggagaagatccgatggctgaccctgtgtaaggac
agaatgggagctgtgtttgattttccctcggagtgtgaatctcaggtcttgaattattgg
accgacgggaaatttgataccctgtgcaaggccacagaactgcctgaattacaggaaaaa
gaaagacccttctccccaggggcccgtggcggcagggggagggggtcgtttggggggcgc
ggcagagacttttccagttacaacaacagatctagagggggttttggcgggagggggagt
tttggcggtagagggggctttggggggagagggagctttggtggcagaggagggttcaaa
agatcaggtgactttggtgaagcaagtccgcaaaacaagaaaattcgtttttag
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