Magallana gigas (Pacific oyster): 105344130
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Entry
105344130 CDS
T03920
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105344130
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105344130
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105344130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
zf-C2H2_DHX34
OB_NTP_bind
HA2_C
DEAD
AAA_22
HA2_N
Rad17
nSTAND3
ResIII
AAA_16
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
105344130
NCBI-ProteinID:
XP_034326251
LinkDB
All DBs
Position
6:24327894..24344177
Genome browser
AA seq
1211 aa
AA seq
DB search
MESNVNMVNEKRQKHKKKHKKHKHRRHSGGDNSTEERDSYKRDSRHKKDTSDYERKYEEN
ASSYHASNSRAQDCKEDLYTDSRDHPDYDFNFHDYRSSLNKIFFREDTFLKRGTKDYDDF
WNFLKRYQDFQRKKMEAGKDASKHLEEYDEEKLALPCHYDKRYRVNIGIVSKNVEEFLRR
GKLPDCEVEKELTIEKVRQFKHILLYYLDFLQKQKFNKLKKIRSDQENLPIFQYRQMILD
KLEQNQIVVVAGDTGCGKSTQVPQYLLAAGYTGIACTQPRRIACISLSKRVGYETLNEYG
SEVAFQVRFEKTKTRFTRILFLTEGLLLRQMTSDALLSQYNVIVIDEVHERHIHTDFLLG
VMKCLLQHRKDLKLVLMSATININLFSNYFDGAPVVKVPGRLYPIQLEYVPSRKDEFRSK
NDRLDPSPYLRIMQTIDTKYPLTERGDLLIFLSGMSEIMAVVEAAKAYAQQTKRWIVLPL
HGTLSVDEQDKVFDFPPEGVRKCIVSTNIAETSVTIDGVRFIIDSGKVKEMTFDPKYKMQ
RLQEFWISQASAEQRKGRAGRTGPGVCYRLYEESDFHSFQEYATPEIQRVSLDSLILQML
SMGLPDVRKFPFLEEPEMSSIENALYFLKEQNAVTEDEKLTPIGQMLSRLPVEVITGKML
IMGSIFHMIDPVLSIAAALSVQSPFTSKAHSNYDAMNARKPLESDHGDPFTLLNAFDEWI
QVKSKGQDTKKWCRRRGLEEQRFYEMIKLKEQFKTLLMDHNLLLKEDPRESFTTSDERRR
KHGDRKRLGELKKEKNRESKRRKVLKLEDDDFVISDDEKEEDQGDDIKDLEFRLSHNLSK
LQESSIKNRSFTLGEINLLKIILCSGLYPQVALADENNSGRSDAEQAFHTKTKPFLLLHP
TCVFALRPELLRSTEMKEDETCPSDLRGKLSNNHQLLAYVSLLETNKPYLINTMRVPALQ
TVTMFSNSIDTDAACMRLVCDGWLEIRFVDEETASNTLSSLIQLRATWQNLLKLRLKDTL
KSLDEDKRVNPRARQLEKILAKKLSEYLSCEVCYAIRRVMAAEQNRLYRGPDREAGGKNK
ILNDVLKSGTEGKVHPVKGGIQINHYLTYNCLLDESEASIWGEYTSSMQKHWVCPRCEAN
LIVSIQERLEHESECQNKNFEPTQQEEAQEMEEVKQAQMNPLRKHYFCDKCDQGFRFTTT
EILKHKKSHVT
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgaatgtgaacatggtgaatgagaaacgacagaagcataagaaaaaacacaag
aagcacaaacacagaagacactcaggtggtgacaactcaacagaagaaagagacagttat
aagagagacagtagacacaaaaaggacacctcagattatgaaaggaaatatgaggaaaat
gcatcttcatatcatgccagtaattccagagctcaagactgcaaggaagacctatacaca
gactccagggaccacccagactatgactttaattttcatgactacagatcttcactgaac
aagatattttttagagaggacactttcttgaagagaggaactaaagattatgatgatttt
tggaactttttaaaaagatatcaagatttccagaggaagaaaatggaagcaggaaaagac
gcctcaaaacatttagaggaatacgatgaggagaaattagcgttgccatgtcactatgac
aagcggtacagagtgaatattggcattgtgagcaaaaatgtagaagaatttctgagacga
gggaaactgccagattgtgaggttgagaaagaactaaccatcgagaaagtgaggcagttc
aaacatatcttgttatactatctagattttctacagaagcaaaagtttaataagctaaag
aagatccgatcagaccaggaaaatctgccaatttttcagtacaggcagatgattctggac
aaactggaacaaaatcagattgtggtggtagctggagacactggatgtggaaaatccacc
caggttcctcagtatttattagcagctgggtacactgggatagcttgcactcagcctagg
cgtattgcctgtatctcattgtccaaaagagtaggatatgagacactgaacgaatatggg
tcggaggttgcgttccaggttaggtttgaaaaaactaaaactagattcaccaggatactg
tttttaacagaaggcctgttactaagacagatgacctcggatgctctcttaagccagtac
aatgtcatcgtcattgacgaggtccatgagcggcacatccacacagacttcctcctcggt
gtgatgaaatgtctgctgcagcatcggaaagacctgaagctggtgttaatgtcggccact
attaatatcaatctgttcagcaactactttgatggagccccagtcgtcaaggtcccagga
agattgtatccgatccaactagaatatgttccaagcaggaaagatgaattccggtccaaa
aatgacagactagacccatctccgtaccttcgaataatgcaaactatagatacaaagtac
ccactcacagagaggggagatcttctgattttcttgagtggaatgtcagagataatggcg
gttgtagaggcagccaaagcgtatgcccagcaaaccaagaggtggattgtacttccatta
catggaaccctctctgtggatgaacaagacaaggtgtttgattttccaccagagggagta
aggaaatgcatcgtgtctacaaacattgcagaaacctctgtgaccattgatggcgtccgc
ttcattatcgactcaggaaaggtcaaggagatgacctttgaccccaagtataaaatgcag
aggcttcaagagttttggatcagtcaggctagtgctgaacagaggaaaggcagggcaggt
agaacaggccccggggtgtgttacaggctgtacgaggagtcagatttccattccttccaa
gagtacgccaccccagagatccagagggtgtcactcgactccctcatcctgcaaatgtta
tcgatggggctccctgacgtccgcaaatttccttttcttgaggagcctgaaatgagcagt
atagaaaatgccttatatttcctaaaagaacagaatgcagtaactgaagatgagaagttg
acaccgattggtcagatgctgtcgcgcctacctgttgaagtcatcaccggaaagatgctt
atcatgggctcaatatttcatatgatagaccctgtgttgtctatagcagctgcactgagt
gtacagtctccatttaccagcaaagctcattcaaactacgatgcaatgaatgctaggaaa
cctttggaatcggaccatggggacccatttacattgctaaatgcctttgatgaatggata
caggtaaaaagcaaaggtcaggacacaaagaaatggtgtagaagacgaggtttagaggag
cagagattctatgaaatgattaagttaaaggaacagtttaagacccttttgatggatcat
aacttgctgctaaaagaggatcccagagaaagtttcacaacgagtgacgaaagacgacgt
aagcatggtgataggaaacgactcggggaactgaagaaagagaaaaaccgagaatccaaa
agaaggaaggtcttaaaattagaagatgatgactttgtcattagtgatgatgagaaggaa
gaagatcaaggggacgatatcaaggatctggaattccgcctctctcataatctttcaaaa
ctacaggaaagttccattaagaacagaagttttacactgggagagattaacttgctgaaa
attattttgtgtagtggactgtatccacaggtggctctggctgatgagaataactcgggc
agatcagacgcggagcaggctttccacacaaagacaaaacctttcctactgcttcaccct
acatgtgtgtttgccctccgccctgaactgctgaggtccacagaaatgaaagaggacgag
acctgtccctccgacctgcgtgggaaactcagcaacaatcaccagctgttggcttatgtg
tctctcctggaaaccaacaagccctacctcatcaacacaatgagagttcccgctctacag
actgtcactatgttctccaacagcattgacacagatgccgcctgcatgagacttgtgtgt
gatggatggctggagatccgattcgtggatgaggagacagcatccaacactttatccagt
ttaattcagctcagggcaacatggcagaacttactgaaactgagacttaaagacactcta
aagagtctggacgaggacaaaagggtcaatcccagagctcggcagctggagaaaattctg
gctaaaaagctctctgaatacttatcctgtgaagtttgctacgcaatacgtcgtgtaatg
gccgctgagcagaatcgtctctatagaggaccagacagggaagctggaggaaagaataaa
atcctgaatgatgtactgaagtccggcaccgagggaaaggttcacccagtgaaaggcgga
attcagattaaccactatctcacctataattgtttacttgacgagtctgaagccagcatc
tggggagagtacactagcagcatgcagaaacactgggtctgtccgcggtgtgaggccaat
ctcatcgtgtccatccaagagagactcgagcacgagagcgagtgtcagaacaaaaatttc
gagcccactcagcaggaggaggctcaggagatggaagaggtcaaacaggctcagatgaac
ccgctcaggaaacattacttttgtgataagtgtgaccaaggcttccgattcacaacaacg
gaaatattaaaacacaagaaatctcatgtaacttga
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