Magallana gigas (Pacific oyster): 105344236
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Entry
105344236 CDS
T03920
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105344236
09124 Replication and repair
03420 Nucleotide excision repair
105344236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105344236
03400 DNA repair and recombination proteins [BR:
crg03400
]
105344236
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105344236
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105344236
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105344236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
DUF3994
Motif
Other DBs
NCBI-GeneID:
105344236
NCBI-ProteinID:
XP_011450258
LinkDB
All DBs
Position
8:complement(25053734..25066135)
Genome browser
AA seq
1928 aa
AA seq
DB search
MAYTADSNAPLRDVKKVQFGILSPDEIRRMSVTDGGIRYSEVTEGGRPKLGGLMDPRQGT
IDRSARCQTCAGNISECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNP
KIKEILSKSKAYPRKRLVAVYDLCKSRKVCEGGDEMDNAKLGEETQEGDQKKGHGGCGRY
QPKIKRTGLELIAEWKDTNEDSQEKKIVLTADRVHEIFKRISDDECQVLGMDHRYSRPDW
MIVTVMPVPPLAVRPAVVMFGSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDM
KMLQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERI
DLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLS
VTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRK
MTKRDVFLDRGQVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHS
THPDEEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGWVIAGE
MYGHIQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEP
TPGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIAC
VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMP
TLKPSNRAFERQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDREWEQLREDRDILR
SIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD
RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMV
GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQA
ARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVSKI
SAWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDES
KMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGE
FKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVIS
FDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAASHGE
MDPMKGVSECIIVGQLARIGTGCFDLLLDAEKCKYGMEIPTAIGAGMPGGIGTGLFFGAG
ASPAAGMSPQMTPWQQGATPAYASAWSPGVGSGMTPGAAGFSPSAASESGYSPGYSPAWS
PQPGSPGPASPYIPSPVGGGMSPSYSPASPSYVPSSPAGTPQSPGYSPTSPSYSPTSPGY
SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPTSPSYSPSSPKYSPTSP
SYSPTSPSYSPSSPQYSPSSPKYSPSSPSYSPSSPKYTPNSPSYSPSSPNYSPTSPEYSP
SSPRYSPSPKYSPTSPTYSPTSPRHSPASPSYSPSSPQYTPTSPTYTPTSPQYTPTSSRY
SPDTPGSQ
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atggcatatacggctgattccaacgcacctttaagagatgttaagaaagtacagtttggg
atattaagcccagatgaaattcggcgcatgtcagttactgatggagggatcaggtactct
gaagtcacagaaggtggtcggccaaagcttgggggactcatggacccccgccaaggcacc
atagataggtcggcccgatgtcagacttgtgctggaaacatctcggagtgccctggacat
tttggacacatagagctggccaagccagtctttcacattggttttctggtgaaaaccatc
aaaattcttcgatgtgtttgtttcttctgctcaaagctgctggttgacccgaccaatcca
aagatcaaagaaatattgtcaaagtccaaagcctacccacgtaagagattggtcgcagtg
tatgatctgtgcaaatctcgaaaagtgtgtgaaggtggtgatgagatggacaatgctaaa
cttggagaagaaacccaggaaggagatcaaaagaaggggcatggaggatgtggtagatac
cagcccaaaatcaaaagaacaggcctagagttgattgctgaatggaaagatacaaatgag
gattcccaggaaaagaaaattgtcttgacggccgacagggtgcacgaaatcttcaagaga
atttctgatgatgaatgccaggtgttgggaatggatcatagatactcccgtcctgattgg
atgattgtcacagtgatgcctgtgccaccattggcagtccgtcccgctgttgtgatgttt
ggctcggccagaaatcaggatgacttgacacacaaactggcagacattataaaagctaat
aaccagttacgacggaatgaacaaaatggggctgcctcgcacatcatctcagaggatatg
aagatgctgcagtaccatgtagcaacttttacagataatgaacttccgggtctaccaaag
gctgtacaaaaatctggccgtccactgaaatctgtcaaacagagattgaaagggaaagaa
ggtcgtgtcagaggcaatttgatgggaaagcgtgttgatttctcggccagaactgtcatt
actccagaccccaatctaagaattgatcaggttggagtgcctcgctccattgcacagaat
atgacatttccagaacttgtcacaccattcaacattgacagaatgcaagagcttgttagg
aggggagccaatcagtaccccggggccaaatacatcattcgtgacaatggtgaaaggatt
gatctgaggtttcaccccaaagctagtgatcttcatttgcagattggttacaaggtggag
agacacatgcaggacaatgactacattgtgttcaacagacagcctaccctccacaaaatg
agtatgatgtgtcacaaggtcaaggttcttccttggtccacattcaggctcaatctcagt
gtaaccactccatacaatgctgactttgatggagatgagatgaacctccacttgccccag
tccttggaaaccaaggctgagatctctaacctggccctggtacccaggatgatcatcacc
cctcaggccaacaggcctgtcatgggtattgtacaggacaccctgacagctgtcaggaaa
atgaccaagagggatgtcttcttggacaggggtcaagtcatgaacctgttgatgttcttg
cccagatgggatggtcatgttcctcagccagccattctgaagcctaaacctctgtggaca
gggaagcagttgttctcgttagtcattcccggacgaaccaactgtatcagaacccacagc
acccacccagacgaagaggacaaggggccgtacaagtggatctccccaggagacaccaag
gttctgattgaagatggtatgctgatcagtggcattctgtgtaagaagaccctgggtact
tccagcggctccctggcccatgtggtgttcatggagtacggctgggtgatcgccggcgaa
atgtacggtcacatccagaccttggtcaacaactggctgctgttggagggacacagtatt
ggtattggggacaccattgccgacccccagacctacattgatatccaggacactatcaaa
aaggctaagcatgatgtgatagaagtcattgagaaagcccacaatgatgatctggaacca
actcctggtaacacactgaggcagacctttgagaacatggtgaacagaatcctaaacgat
gccagagacaagacaggaagtaaagctcagaaatctctgtccgactacaacaacttcaaa
gctatggtggtggcaggatccaagggatccaagattaacatctctcaggttattgcctgt
gtggggcaacagaacgtagaaggaaagcgaattccctttggtttccgtcacagaactctg
cctcactttatcaaggatgattacggtccagagtctagagggtttgttgagaactcgtac
ctggctggtcttacaccctcagagttctacttccacgccatgggaggtcgtgaagggttg
atcgatactgctgtcaaaacagcagaaacaggttacattcagagaagattgatcaaagct
atggaaagtgtgatggtgaaatacgatggaacagtgcgtaatcaggttgaacagttggtt
cagctgcgttacggagaggacggacttgatgcaacgcatgtggaattccagacaatgccc
actctgaaaccgtccaacagagcttttgagaggcagtttaaatttgatgcaacaaatgaa
aggaacatgaaaaagtgtttgtcagaggaagtgatcaaggacttgatgggagatgctttg
gcggtctcccaactggatcgcgagtgggagcagttgagggaggatcgagatattctgcgt
tccatattcccaacgggagacagcaaagtggtgctgccctgtaatttacagagaatgatc
tggaatgctcagaagatattccgtattgacactcataaacctactgatctgcatcctatt
aaagttgtcgaaggagttgaggatttatgtaagcgactgatagtggtggctggaggggac
agactcagtatccaggccaatgctaatgctactctgctcttcaagtgtttgataagatct
accctgtgtgccaagcgtgttacggaggagttccgtctcagttcagaagcattcgagtgg
ctcattggagaagtggaatctagattccaacaagctcaggctcatcctggtgaaatggtg
ggagctcttgccgcccagtctctgggagaacctgccacacagatgacattgaacactttc
cattatgctggtgtgtctgccaagaacgtaacccttggtgtgccccgtctgaaggaaatc
atcaacatctccaagaaaccaaaaacaccatctctgactgtttacttgattggacaagct
gcaagagatgctgaaaaggccaaggatgtactgtgtagattagaacacaccactctgcgt
aaagtgacggccaacactgctatctactacgaccctgacccacagaatacagtgatctct
gaggaccaggagtgggtaaatgtgtattacgaaatgcctgactttgatgtgtccaaaata
tccgcttggctactcagaatagaactggaccgaaaaagaatgacagacaaaaaacttacc
atggaacagatctctgaaaaaattacagccggatttggtgatgacttgaactgcatcttc
aatgatgacaatgctgaaaaacttgtcctccgaatcaggatcatgaactctgacgaaagc
aaaatgcagaatgaggaagaaattgttgacaagatggaagatgatgtgttcttgcgttgt
attgaggcaaacctgttgtcagatatgacccttcaaggaattgaagcaattgccaaggtg
tacatgcacttgcccaatacagaggacaagaagaggatctccattacagaggagggcgag
tttaaggctgtagccgagtggattctggaaactgatggtacagctctgatgaaggttctc
agtcagagagacgtcgatccaatccgaacaacaaccaatgacatcgtagaagtcttctcg
atacttgggatagaggctgtaagaaagtctatagaaaaggaaatgaaccacgtcatttcc
tttgacggctcctatgtcaattacagacatttgtcactgttgtgcgactccatgacagca
aagggtcacttgatggccatcacaagacacggaatcaacaggcaggaaacaggagctctg
gctcgttgctcctttgaggaaacggtggacattttgatggaggctgcctctcatggagaa
atggacccaatgaagggtgtctctgagtgtattattgtaggccagctggctagaattgga
acaggttgctttgatctcttgttggatgctgaaaagtgtaaatatggaatggagattcca
actgctattggagcaggaatgccaggcggaattggcactggtttgttctttggagctgga
gccagtcctgctgctggaatgtcacctcaaatgaccccatggcagcagggagctacacca
gcatatgccagtgcctggtcacccggagttggcagtggaatgacccccggagctgcaggc
ttctcaccatctgctgctagtgagagtgggtacagccctggctacagtcctgcctggtca
ccccagccaggttccccgggacctgccagtccatacattcctagcccagtagggggaggc
atgtctcctagctactctccagcatcgccttcttatgtgccgtcatctcctgctggtaca
ccacagagtccagggtattctcccacaagcccttcatacagtccaacaagtcctgggtat
tctccaacttctccaaattacagcccgacaagtccatcttattctccgacaagtccgagt
tacagtccgacgtcaccctcgtacagtccaaccagcccctcctactctccaactagtccg
agctacagtccaacttcaccatcatacagtccaacaagcccatcttattccccaacaagt
ccatcatattccccaaccagtccatcatacagcccaacaagtccttcttactcccctacc
agcccctcttactcgcctacatccccttcatattctcctacaagcccctcttattctccc
acatctcctagttacagtccaacttcccccagctactctccaacttccccgagttattca
ccaacaagcccaagttactcccccacttctccaagctattctccaacaagtccttcatac
agtccttctagtccatcatacagcccgagctctccaagctactctccaactagccccagt
tacagcccaacaagtccaagttattctccgagcagtccaaagtacagccccacaagtcct
tcctactccccaactagcccctcttattcccccagctcaccacagtactccccatcatct
cccaaatattccccctcaagtccttcttactccccaagcagcccaaaatacacccccaac
tctccctcttattctccctcttctcctaactacagccctacttcacctgagtacagtcca
agttctccaaggtacagccccagtccaaagtattcccctacatctccaacctattccccc
accagcccgagacactctccagctagtccttcatattccccttcgagtccacagtacacc
cccactagccccacatacaccccaacgtctccccagtataccccaaccagctcacgctat
tctcctgacacaccagggtcacagtaa
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integrated database retrieval system
