Magallana gigas (Pacific oyster): 105344248
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Entry
105344248 CDS
T03920
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
105344248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105344248
Transcription factors [BR:
crg03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
105344248
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
SLH
Motif
Other DBs
NCBI-GeneID:
105344248
NCBI-ProteinID:
XP_034335915
UniProt:
A0A8W8KBD2
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Position
3:36322388..36342362
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AA seq
1071 aa
AA seq
DB search
MEPTEETDDAVERRYNELCLDLNMDKGTKEEAWESYQKIKTKYTLEGDQMHWLACALYEA
CRKSVTPTVGRGTMEGNGVSLTRLLRSAKFSLIQFFNKMKKWSDMAGLPQEFIDKVNKLE
RNFAVSTVIFKKFEPIFSDIFQHPTDSHQNKQNRNKKQRRMPCTSTEVFNFCWTMFIQVK
GHFPAISDDLVNSYHLLLCCLDWFYANALMGGRKDLLNPSFEGLPEDFGNRDWKPPTESP
CLIKYLCDKHEGLEIEAKVIKEHWWKPHIKKLFDKKILKGKPDTLSAVLEVGNFDANKKS
INEAYEDYPLNYSSKSMNSEYEAYVLSVGDFDERVFLGSEADEEIGTPTKYRDEGTGELA
ERLQMKANLQQHIDETNSLAPSTPLTGRRYLKDKDPSTTPVSTATQSVSKLQTLLLGRKA
LPSDDLLDILSEIGTDPKTRIMERVTEMGEIFCAHYVKETDDHAGSQIDFAKKRLQLGEC
LYYKLLESILYTEKKRNDSKEGKAALATLMEQDIFHRTLFACCLEIVIFSYNSQRSFPWI
VEIFNLSPYHFYKVIEIIIRTEEGFSRDVVKHLNHIEESILESLAWKSESPLWDAIKESS
VPGCEDVVLPNEQDVMKTTVKHPAVIRVTETQPQQQQQRKDVLMSPPAGVSAADRFSSPS
PGSAKRRLFSVLTQPQETPVSSAENSSTDGSSSSTKTTQIIAFQQAQTNDGRQILIPVHT
IIHSGAKDDKKETTKARPKKTGSLALFFRKLYHLASVRLRDLCEQLYIDDVDLRKKMWTC
FEYVLVNHVELMMDRHIDQIIMCAIYVMAKVCDHSQSFTDIMRCYRLQPQAESHVYRSVL
LKCRTRRKSGGSDSSKNDTSGQSSPVNVENVEKKRSEKLSSMRSTSTLPTPHPGSHPPTP
TILVHSATGSEEGEERGDLIMFYNRVFVEKVKKFAQKFSAQKNSKDIPPLSPLPVVKSQS
ASPRRVSSKHSIYLSPHKPTLHATPMATGLSYSFQKSPAKDLRAINNMIKMKDFREGKKL
LGKRQLDVHMEEEDGPQTKQLCTGFSFLKRLQNVSSERQEASILNLDYTTK
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggagccaacagaggaaactgacgatgccgtggaaaggagatacaatgaactgtgtctc
gacctgaatatggacaaagggactaaagaggaggcatgggaaagctaccaaaaaattaaa
acaaaatacacactggagggagatcagatgcactggcttgcttgtgcattgtacgaagca
tgcaggaaaagtgtcactccaaccgtaggaaggggaacaatggaaggaaatggagtgtcg
ttaacaaggcttttacgctccgcaaagtttagtcttatacagtttttcaacaaaatgaag
aagtggtcggacatggctggtctaccacaagaattcattgataaagttaacaaattggag
aggaattttgcagtttccactgtgattttcaagaagtttgaaccaatattttctgatata
ttccaacatccaacggacagtcaccaaaataaacaaaatagaaataagaaacaaaggaga
atgccatgtacttcaaccgaagtatttaatttctgttggaccatgttcattcaagtgaaa
gggcattttcctgctataagtgatgatcttgttaactcctaccaccttctgctatgctgc
ttagactggttctatgctaatgcattaatgggaggacgaaaggatttactgaatccttca
tttgagggtttaccagaagactttggaaacagagactggaaacccccaactgaaagtcca
tgtttgattaagtacctgtgtgataaacatgaaggtttagaaatagaagccaaagtcatc
aaggaacattggtggaaaccacacattaaaaagctatttgataaaaagattttgaaagga
aagccagatactctatcagcggttctagaagttggcaactttgatgccaacaaaaagtca
ataaatgaagcatatgaagattatcccttaaattatagcagcaaatctatgaacagcgaa
tatgaagcctatgtgttaagtgtgggggactttgatgaaagggtgtttctgggtagtgaa
gccgatgaagaaataggaacacctaccaagtacagggatgagggcactggagaactggca
gagaggctgcagatgaaggccaatctacaacaacacattgatgagaccaatagcttggct
ccctctactcctctgacgggccggcggtacctgaaggacaaggacccgagtacaacgccc
gtctcgaccgccacccagagtgtcagcaaactccagactctgctgttggggcgcaaggct
ctccctagtgatgacctgctggacatattaagtgaaattggtactgatccaaaaacacgt
ataatggagagagttaccgagatgggtgaaattttctgtgcccattatgttaaggagact
gacgaccatgcaggttcccaaatcgactttgccaaaaagaggttacagttaggagagtgc
ctatactacaaattgttagagagtattttgtatactgaaaagaagcggaatgatagcaaa
gaaggcaaagcagctcttgcaacacttatggaacaagacatattccacagaactttattt
gcttgctgcttggaaattgttatattctcttacaactcacagaggtcttttccttggatt
gtggaaatttttaatttaagtccctaccatttttacaaagtgattgagataatcatcaga
acagaagaaggcttttcaagagatgtagttaaacaccttaaccatattgaggagagtata
ctggagagccttgcatggaagagtgagtcccctctgtgggatgccatcaaggagagcagt
gtgcctggctgtgaagatgtagtgctgcccaatgaacaggatgtgatgaagactacagtc
aaacacccagctgtcatcagggtcacagaaacccagccccagcaacagcagcaaagaaag
gatgtgctgatgtccccacctgccggtgtgtctgccgctgaccgctttagctccccctct
ccaggaagtgccaagcggcgtctttttagtgtactgacccagccacaagaaacgccggtg
tcatcagcagagaattcctcaacagacggcagtagttcatctacaaagaccacccagatt
attgccttccagcaggcacagacaaatgacgggagacagatattaattcctgtccatact
ataattcattctggagcaaaagatgacaaaaaagaaacaacaaaagccagacccaagaaa
acaggatcattggctttgttctttagaaagctatatcatctagcaagtgtaaggctacga
gatctgtgtgaacagttgtatattgatgatgttgaccttcggaagaaaatgtggacatgt
tttgagtatgtacttgtgaatcatgtggagctgatgatggacagacacattgatcaaatc
attatgtgtgcaatctacgtcatggcaaaggtgtgtgaccattcacagtctttcacagac
atcatgagatgctacaggttacagccacaagcagagagtcatgtctacagaagtgtttta
ctgaaatgtcgtacaaggcgaaaatctggagggagtgatagcagcaagaacgacacaagt
ggacagtcttcacctgtcaatgtagagaatgtagagaaaaagaggtcagaaaaattatcc
tcaatgcgctcaactagtactctacccaccccccacccagggagccatcccccaacccca
actatattggtgcactcagcgactgggagtgaagagggagaagaaagaggggacctcatc
atgttctacaatagggtctttgtagagaaagtaaaaaagtttgcccaaaaattctctgct
caaaagaactcaaaggatatcccaccactatcacctctacctgtggttaaaagtcagtcc
gcttctcctaggagagtgtccagtaaacattctatatacttatctccgcataaaccaaca
ttacatgctactccaatggcaactggtttgtcatattctttccagaagagtcctgcaaag
gacttgagggccatcaataacatgataaaaatgaaagactttagagaaggtaaaaaactt
ttgggtaaaaggcagctagatgtccacatggaggaagaggatgggcctcagaccaagcag
ctgtgtactggcttctccttcctgaagcggctacagaatgtcagcagtgagaggcaggaa
gccagtatattgaacctggattacaccaccaaataa
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