Magallana gigas (Pacific oyster): 105344506
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Entry
105344506 CDS
T03920
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105344506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105344506
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
105344506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_11
TPR_17
TPR_CcmH_CycH
TPR_14
TPR_8
TPR_16
TPR_12
TPR_7
TPR_9
ARM_TT21_C
FAT
TPR_10
ANAPC3
DUF7017
TPR_COPA_B
TPR_20
TPR_30
Motif
Other DBs
NCBI-GeneID:
105344506
NCBI-ProteinID:
XP_011450592
LinkDB
All DBs
Position
6:complement(14411916..14443052)
Genome browser
AA seq
1504 aa
AA seq
DB search
MIGFDILKRCNPNIHKTVEKPEDSFLMDPKEVKSALKNARECIKNKDYKEALRHCKGVLA
QDKSNYNAFVFVGVAADGLEQADQAVKAYRRATEVDPEQPLAWQGLSGFYEKHPSSENDK
ELLQVYKKLRGLCEKDSDKKIEITKKLVHLHIKLGEVVEGVDLYIKLLSEVSDDSIKCSL
QTELLSLLSRLPSLTQDQEQLLVDMVESVLKMDSPLEEGVVGLYLDVLMKKNDAPRLEKC
CQLVCKKYPSMKYPLEVNILLYMDKALGSESLLPIMEAALSDLMTRLAELDSASQILTAA
QGFESLCNKELIKARDSFLKVLPDLETTVCVQYYLSLTYYLLHKLTDAESTVKQCVLTLG
KKTRRLTVASGAVSRAVNVLKARILLRTGTPSSLQTALTLTQELCTEISSPTVLSLQGHI
LLKLNRVEETEEIIGKLDDGENRMALEGHVKFYQAEFTKSAVIFCELMKKVSTSSEYHLM
YAKSLWYDNSSLSNNLQTCYTALLKSAKLDPYSSEPFEYLGRFYTEIQKDKGKGKRCYQK
AFDLDRNNDKAGEALCDLMTELGEEEDAYQLLLSVTSSASAGCCKWAWLRLGLHQVKHDT
ISAAISSFQSALRADPKDPHVFECLAEAYYKRGSYNAALKAFIKASELNPKSLYSLFMIA
CIKQTLRVLSEAVDDYKQILEGSPNYVPALKGLGETYVLQAKHHLSQGFNGRAKLNCQDA
LQCLTRAVCHRPDLSCLWKLMGDSCTIIHPLPTKNFSFVVPENLYKSKDSENSCELNLQQ
TLQLGARCYGRALKLLPECAQLWHDLGFNLYQQSLHSEDENAVGVAEKSAEALKKGLSLE
PANHQIWNTLGLVYCHSGLNKPSLGQHCFIKSIQAESENVVAWTNLATLYLEKGNIQLAH
EAFKKAQSLDPNYVSCWIGQAMIAETVGDDDAMDLFRHTTELSPHVEGSMGYAHWVCTLL
KDKAKHSTEMYRYAIHQMAAIPAASDALARYLDLVKTNPCAYNMYGLLMEQQELYRSAKT
AFIRSINLLEPSDILLNHVKLNLARVLCKLGDYSGAVTLYTKFGELDSLQDLCHMGLAFY
KSQQYTESYQAYDKALEVSTNDTDSSQIHAALGMVAYKFGDIDGAKASLFQSSQLQPASR
HGLEALCALGLKSRDVTLTHAVLQELVGTEMDNSGIYFTVLQHGLLEENWELAKSFLEKC
IHWFPDKYKLWRLLSRLQLRHHHGNKPSTAAMCMQAAMSLEPKCQELMTEVAMGQLLDGK
HVSKDTKNNALLSAQRALLINPGKLGNWCSLVSSVHCQSELEAESERVQALHKIEARYLT
WLMSAEELSEDLRTWCVKQLTAAQLLSGERTLESLSGELKEYIANLLQDKSLQSSDVQHV
FSLYKTLLNDGGNDEVTKSFSRLTDDLIKKTSSPDPLIMLMRAIILMKTNPKLAKHRLVD
VLLAVRSERPQPLLLRSVSRRCLLSILRESPDKDSELIQLILTEAENDGDDETVNFCQQF
IKDA
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggttcgacattcttaaaagatgtaacccaaatatacacaagacagttgaaaaa
cctgaagacagttttctgatggaccccaaggaagttaaatcagcattgaaaaatgctaga
gaatgtataaagaataaagactacaaagaggctctgagacattgcaaaggagttttggca
caggacaagagcaattacaatgcctttgtatttgtgggggtggctgctgatgggcttgaa
caggccgatcaggctgtgaaggcatacagacgagccacagaggttgatccagaacaacca
ctcgcatggcagggtctgagcggtttctatgagaagcacccatcctctgaaaatgacaag
gaactattgcaggtctataaaaaactcagaggactttgtgaaaaagacagtgataagaaa
attgagattacaaagaagcttgttcatctacacattaagcttggggaggttgttgagggt
gtagatctgtacatcaaattgttatccgaggtgtcagatgactccattaaatgtagtcta
cagacagagttattgtccttgctgtccagattgccttccttaacacaagatcaagaacaa
ctgctggtagatatggttgaaagtgttctgaagatggactcaccactagaggagggggtt
gttgggctctacttggatgttcttatgaagaaaaatgatgcacccaggttggaaaagtgt
tgccagcttgtttgtaaaaagtatccatcaatgaagtatccacttgaagtcaacatactg
ttatatatggataaagccttaggttctgagtcccttctgcctataatggaggctgctctt
tctgatttgatgacaagacttgcagagttagacagtgcgagtcagatacttacagctgct
cagggttttgagtccctctgtaacaaagaactgatcaaggctagggacagcttcctcaaa
gtgctaccagacctggagaccacagtctgtgttcagtattacctgtcactcacctactat
ctgctacataagctgacagacgctgaatctacagtcaaacagtgtgtcctaactctgggg
aagaagacgagacgtctgaccgttgccagtggtgctgtatccagggcagtcaatgttcta
aaagccaggatcctccttcgcacggggacccccagctccctgcagactgccctaaccctc
acccaggagctgtgtacagaaatatcaagtccaacagttttatctctgcaagggcatatt
ttgctgaagttgaacagagtagaggaaacagaggagataattggtaagctggatgatggt
gagaatagaatggccttggagggacatgtcaagttttatcaggcagaattcaccaagtca
gctgtcatattttgtgagctgatgaagaaggtcagtacaagcagtgagtaccacctgatg
tatgccaagtctctgtggtacgacaacagttcactgtcaaacaacctccaaacatgctac
actgctctactaaagtctgccaaactcgacccctacagcagtgagccgtttgagtacttg
gggaggttttacactgagatacaaaaagacaaggggaaaggaaagcgctgctatcagaaa
gcgttcgacctggacaggaataatgataaagctggcgaggcactatgtgatctaatgact
gaactgggggaagaggaggatgcctatcaattgttattgtctgtgacaagcagtgctagt
gctggatgctgtaagtgggcgtggctgaggttgggtcttcaccaggtcaaacatgacaca
atatcagcggccatctccagcttccagtcggctctgagggccgatcctaaagacccgcat
gtgtttgagtgtttggctgaggcctactataagagaggaagctacaatgctgccctcaag
gccttcataaaagcttcagagttgaatccgaaatctttgtacagtctgttcatgattgct
tgcattaagcagaccttaagggtgctgagtgaggctgtagatgattacaagcagatactg
gagggctcgcccaattacgtaccagctctgaaaggtctcggggagacgtatgtactgcag
gccaagcatcacctctctcagggctttaatgggcgtgccaagctgaactgtcaggatgct
cttcaatgtcttactagggcagtgtgccacaggcctgatttgtcctgcctctggaagttg
atgggtgactcctgcacaatcattcaccccctcccaacaaaaaacttcagttttgtagtg
cctgaaaatttgtacaaatccaaagactcagaaaacagttgtgaactcaacttacaacag
actctacagcttggagccaggtgctatgggagagctctaaagctgttaccggaatgtgct
cagctgtggcatgatctggggttcaatctgtatcagcagagcctgcactcggaggatgag
aatgcagtgggtgtggccgagaagtcagcagaggcccttaagaaggggttgtccctggag
cctgccaatcatcagatctggaacacactcggtcttgtttattgtcactcgggtctgaat
aaaccatcacttgggcagcactgttttatcaagtctatacaagcagaatctgaaaatgtg
gtagcatggacaaacctagcaacactttatcttgaaaaaggaaacatacagttagctcat
gaagctttcaaaaaggcccagagtttggacccaaactatgtgtcctgttggattggtcag
gccatgattgcagaaacagtgggagatgatgatgctatggatttgttccgacacactaca
gagttatctccccatgttgagggttccatggggtacgcccactgggtgtgtaccttactc
aaggacaaagccaagcacagcacggagatgtaccgctacgccattcaccagatggcggcc
attccggccgcctccgacgctctggccagatatctggaccttgtgaagacaaacccttgt
gcatacaacatgtatgggctgctgatggaacaacaggaactttacagatcagcaaagacg
gccttcatcaggtctattaatctactggagccgagtgacattctcctgaaccacgtcaaa
ctcaacctggccagagtactgtgcaaactcggggactactctggtgcggtaactctgtac
acaaagtttggagaactggactctctgcaggatctgtgtcacatgggcctagccttctac
aagtctcagcagtacacagagagctaccaagcttatgacaaagccctagaggtcagcacc
aatgacacagatagttcacagattcacgctgctttggggatggtggcttataagtttgga
gacatagatggagccaaagcttctctctttcaaagttcccagctgcagcctgcctctcgc
catggacttgaggctctttgtgcccttggtctgaagtctcgcgatgtgaccttgacccat
gctgtccttcaggaactggtcgggacagagatggacaactctggaatatatttcactgtc
cttcaacatggtcttctagaagaaaactgggagcttgcaaaatcattcctagaaaaatgt
atccactggtttccagataaatataaactctggaggcttttatcaaggttacagctcaga
catcaccatggtaacaaaccctccactgcagcgatgtgtatgcaggcagcgatgagtctg
gagcccaagtgtcaggaattgatgacagaggtcgccatgggacaactactggacggcaaa
catgtgtcaaaggacaccaaaaataacgccttactgagtgcacaaagagcattgctcatc
aacccaggtaaattaggcaactggtgctctctggtctcctctgttcactgtcaatcagag
ctggaggcggagtctgagcgagttcaggctctccacaagatagaggcccgctacttgaca
tggctgatgtcagcagaagagttatccgaagacttgagaacttggtgtgtaaaacagctg
actgctgctcagttactctcaggggaaagaactctggaatctctaagtggtgaattgaag
gaatatattgcaaatctacttcaagataaatcattacaatccagtgatgtacaacatgtc
ttcagtctgtacaagactctgctgaatgatggaggaaatgatgaggttaccaagagcttc
tccagactgacagatgacctgataaagaagacctcttcaccagaccccctcataatgctg
atgagagctatcatccttatgaagactaacccaaaactggccaagcatcgactggtggat
gttctgttggccgtccggtcggagcgcccccagcctctcctcctccgctccgtctcccgg
agatgtctgctcagcatcctgcgggaaagtccagacaaagactcagaactcatccagctg
attctgacagaggcagaaaatgatggcgatgatgaaacagtgaacttttgtcagcagttt
atcaaagacgcttga
DBGET
integrated database retrieval system
