Magallana gigas (Pacific oyster): 105344597
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Entry
105344597 CDS
T03920
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105344597
03015 mRNA surveillance pathway
105344597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105344597
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105344597
mRNA cycle factors
P-body specific factors
105344597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105344597
NCBI-ProteinID:
XP_065939031
LinkDB
All DBs
Position
4:complement(53407366..53450576)
Genome browser
AA seq
1393 aa
AA seq
DB search
MSDSRESERGSSGKPRGPEKSSSGGPYRGQDRPSSGKPRPDSSRRYDDRPQKSPYKTSSS
SPSKGSSSGFDTKKGVSKSQSDSGYNERGGNSKRGGDSRSGGGARGDKWSQKGEKDSTKP
LGKAPPPADKSGKKIGKEDRPSDEKGDKREDKKHSKEVKSAAELEEQWQSEDEKKRKAEE
EAKRIEEEKIRKEEEEQRRKEEEQKRLLEEEIKTVKDYQQECQERYDTKRKLRERNQEAA
ENRPDESFFSRLDSSLKKNTAFVKKLKNLTESQKESLTKDFNGLNLNKYIGEAAAAITEA
KLKMSDIACGVHICCLFFQRYSDFSNSLMENWQKYLLSKKDEKFSEEKSRNMSGRQSSGN
QKNKITNPSKYRVDLRFFAELLSVGLFNLGKGLNVLAGQLSFLTLGDKEEHNNLTILTSF
CKHCGDDYAGLLPRKIRLLAEKHGVEIPRSTLLPPERQKGCRNLLGEYYQSLCKHLLMDH
KELKNMERQNRRILQTKGELSAERKETFDTLLQTYQKLLANTAVFADLLDEDLPELPEDE
IKRDDDTGFDIFNPETSAEFQYTGDSTLFEDEDARSFYETLPDLKAFIPGICYKDSEQSG
TKDGSKDDITSLDEDMESLQIEDVEREMETEKQIAEVESKEAEQQEQEEVLEDYGMLPDA
DGTLKPRKEDTDTGSLMKMQYEAYIQTLPNSVNKDLIDKAAVEFCMNFNTKSNRKKLVRA
LFTVHRTRYDLLPFYSRFVATLYPCMPDVASDLVQLLKGDFRWHVRKKDQINIESKLKTV
RFIGELVKFKLFPKSEALHCLKMLMFDFSHHNIEMACALLDSCGRFLYRSQDSHHRTKIY
LDVMMRKKSALHLESRYTTMIENAFYYSNPPETQQSAQKIRPPMHEYIRKLLYKDLSKVT
TEKVLRQMRRLPWDDPEIAFYATKCLIAVWNVRYNSIHCAANLLAGLAPYHEHIAIQVVD
GVLEDIRLGMEVNHPKYNQRRVSGVKYLGELYNYRMLESAVVFKTLYSFITFGVVMDDSG
VSPLDPPEHLFRIRLVCVLLETCGTYFDKGSSKKKLDCFLAYFQRYYWFKRSNPIYTEAR
PFPVDVENLMIDTMECIRPKMRLHPNYEEACKAVEELENEYKQKVASVLTIIETDQEGSA
SETEEGLGTIQEAEEYGEDLSLSGLDESETSQEETSQSQRSTEDQGEEGGESCNEEDDED
VMESAGENEEDDQLTIMKGGPKHIKCSEDEDFMTAFDKMMTENIQARTNESLKVPQLDIA
VPMNLKDKSKKTVSVNLYPMKEEEVPKEEDRSIEFVLMTRRGNRQHFTNLNVPISEEFAT
KYREREQAEKAEKEKMKQVVLGIHERQEEEDYQEMIASLNRVMPVNTNRERRVRYQHPKG
APDADLIFGSKKR
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattcccgagaatcagaaagaggatcctccggtaaaccaaggggtcccgagaag
tcctccagtggaggtccatacaggggacaagacaggccgtcttcaggaaaacctcggcct
gactcctcaaggcgttatgatgacagaccccagaaatctccctacaaaacctcatcttca
tcaccttctaagggaagcagttcaggctttgacaccaaaaaaggagtgagtaaaagtcag
tctgattctggatacaatgagaggggaggaaactccaaaaggggaggcgactccagatca
ggaggtggtgcaaggggagacaaatggtctcagaaaggagagaaagattcgaccaaacct
ttaggaaaggctccacctcctgcagataagagtggcaaaaaaatcggtaaagaagacagg
ccatcagatgagaagggagataagcgtgaggataagaagcactccaaggaggtcaaatct
gctgcggaactggaggaacagtggcagagtgaagatgaaaagaagaggaaggctgaggag
gaggcaaagagaatagaggaggagaagatcaggaaggaggaagaggaacagagaaggaaa
gaagaagaacagaaaaggttactggaagaagaaattaaaactgtgaaggattaccaacag
gaatgtcaggaaagatacgacacaaagagaaaattacgggaaagaaaccaagaggctgca
gaaaatcgcccagacgaatccttcttcagtagattggactctagccttaagaagaacacg
gcttttgtgaaaaaactgaaaaatttaacagaatcacagaaggagagtttgacaaaagac
ttcaatggcttgaacttgaacaagtacataggagaggcagccgcagccattacagaggcg
aagctgaagatgtcggacatagcctgtggggtccacatctgttgtctgttcttccagcgc
tactccgacttctccaactctctgatggaaaactggcagaaatacctactgagcaagaag
gatgaaaagttctcggaggaaaaatcgaggaatatgtcgggtagacagagttctggtaat
caaaagaacaagataaccaaccccagcaagtacagggtggacttgcgcttcttcgccgag
ttgctgtcggtggggctgtttaacctgggtaagggactaaacgtcctggctggtcagctc
agcttcctgaccctgggggacaaggaagaacacaacaacctgaccatactgaccagcttc
tgtaagcactgcggggacgactacgctggcctgctgcccaggaaaatcaggttgttggct
gagaaacatggagtagaaatcccacgtagcacactgctgccgccagagagacagaagggg
tgccgtaacttactgggggaatactaccagtccctgtgtaaacacctactgatggaccac
aaggagcttaaaaacatggagagacagaacagacgcatcctacagaccaaaggagagcta
agcgcagaaaggaaagaaacctttgacacactgttacagacgtatcagaagcttctggcc
aacaccgcagtctttgccgacctgttggatgaagatttgcctgagttacccgaggatgaa
atcaagcgagatgacgacacaggttttgacattttcaaccccgaaacaagtgctgagttc
cagtacacaggggacagtactctgtttgaagacgaagatgccaggtccttctacgagact
ctacctgatctcaaggcgttcatccccgggatttgctacaaggacagtgaacagtctgga
accaaggacggcagtaaggatgacatcacctctctagatgaagatatggagagcctacag
atagaggatgtggagagagagatggagacggagaaacagattgctgaagttgagagtaaa
gaggcggagcagcaggaacaggaagaggtactggaggattatgggatgcttccagacgca
gatggtactttaaaaccaagaaaagaggatactgacacagggagtctaatgaagatgcag
tatgaagcttacatccagacattacctaacagtgtcaacaaggacctcattgacaaggct
gcggtcgagttttgtatgaacttcaacactaagagtaacaggaaaaagttggtgagggca
ctgttcacggtccatcgcaccaggtatgacctgctgccattctactcacgctttgtggcc
accctgtacccttgtatgccagacgtggccagtgatctggtgcagctccttaaaggagac
ttcagatggcatgtacgcaagaaggatcaaatcaacattgagtccaagttaaaaacagtg
agattcataggggaactggtcaagttcaaactgtttccaaagtctgaagcacttcactgc
cttaagatgctgatgttcgacttttcacatcacaatatagagatggcatgtgctctgttg
gactcatgtggacgatttctgtatagatcccaggactcacaccacaggaccaaaatttat
ctggacgtgatgatgaggaagaagtcggccttgcacctggagagtcgctacaccactatg
atagagaatgccttctactacagcaatccccctgagacccagcagtccgcccagaagatc
cggccccccatgcacgagtacatacgcaaactgctgtacaaggacctgtccaaagtcacc
acagaaaaggtgttacgacagatgaggagacttccatgggacgatccagagatagcattc
tatgccaccaagtgtctgattgccgtctggaatgtccgatacaactccattcactgcgct
gccaatctattggccggtctggcaccctaccatgaacacatagctatccaggtggtggac
ggggtgctagaagacatcaggctgggtatggaggtgaatcaccccaagtacaaccagcgg
cgtgtgagcggagtcaagtacctgggggagctgtacaattaccgcatgctggagtcggcc
gtcgtcttcaagacactctactccttcatcacctttggcgtcgttatggatgatagcggc
gtctcccccttggaccccccggagcacctgttccgtatccgcctggtctgtgtgctgctg
gagacctgcgggacctactttgacaagggctccagtaagaagaagctcgactgtttcctg
gcatacttccagcgttactactggttcaagaggagtaaccctatatacaccgaggcccgc
cccttccctgtggacgttgagaacctgatgattgacaccatggagtgtatacgacccaaa
atgaggctccacccgaactacgaggaggcatgcaaggctgtggaggagctagaaaatgag
tacaaacagaaagttgcgtcagtgttgaccatcatagagactgaccaggagggcagtgct
agtgagacggaggagggactgggcaccatccaggaggcagaggaatacggggaggatctg
agtttgagtggactggacgagagtgagacgagtcaggaggagacgagtcagagtcagagg
agcactgaggaccagggagaggagggaggcgagagctgtaatgaggaagatgacgaggat
gtgatggagagtgcgggcgagaatgaagaggatgaccagttgacaatcatgaagggtgga
cctaagcacatcaaatgtagtgaggatgaagatttcatgacggcctttgataaaatgatg
accgagaacattcaggctcgtaccaacgaatccttgaaggtgcctcagctggacattgct
gtacccatgaacctcaaagacaagagcaagaaaacagtgagtgtcaatttgtatcccatg
aaagaagaggaagtgccaaaggaagaggaccggtctattgagtttgttctgatgaccagg
cgagggaacaggcagcattttaccaatctgaatgttccaatatcagaagaatttgctacc
aaatacagagaaagagagcaggcagaaaaggcagagaaagagaagatgaagcaggtggtg
ctaggaatccatgagagacaggaagaggaggattaccaagagatgatagcgtccttgaat
cgtgtgatgccagtgaacactaaccgagagaggagggtgaggtaccagcaccctaagggc
gccccggacgccgacctcatctttggatccaaaaaaagatga
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