Magallana gigas (Pacific oyster): 105344734
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Entry
105344734 CDS
T03920
Name
(RefSeq) low-density lipoprotein receptor-related protein 4
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105344734
Membrane trafficking [BR:
crg04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
105344734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
DUF5050
HYR
Vgb_lyase
Arylesterase
VWC
Ephrin_rec_like
SGL
FXa_inhibition
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
105344734
NCBI-ProteinID:
XP_034337054
LinkDB
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Position
3:20844068..20871560
Genome browser
AA seq
1623 aa
AA seq
DB search
MELVFLVFGALWYKVLCEELYVTTPTSVLHIDTSTSQTSTIVTKENGRLLGLAADWRGER
LYYTDVSPTGGGIYTANLQGGDVRKLPIQYPGMEPVGLAVDWVYGHLYWTDTVYRAVMMS
NLDGTGRVTIVTEKLITPRGIAVDPKRRELYVGDQGKHAVQLCGLDGRNCRELNVTDDSA
TFWPNQIIIDYASKKVHWIDGWVPALYSCSVGGTDCQRKTGNLSTELGSNPAFGLAVGQS
GQLYLSTLHNQSLYRSSLDLELTSVQIASSDTKMFFLLRKEPASNQPTVVTSHPCATNKG
GCSDICVPHSGDSFTCMCPDASGKLPVNKICQPPNQFLLFTDISKGIVGLANVDDSEIQT
TIMRAVKPLAVTYHQNEKKVYFADARLRTIYKCNLDGSDVETVLNSSHGIGQVEGLSIDY
RQNRLYFSNMGFEEYDGVLRSWHTIEMVDLDTKKRRTIVTSLEKPRAVVVDSDRRVLYYT
DWGSAGHVGKVALDGSNRVVLTTAENPNDLIISDNKLLIINNKQPTAEIIEIDLANSNSA
ISRRQLSSVEPLSLAVSGDNLLVSSFTGGLNIYSKPSLGQTYSSSFGHFTRMIVVDTTDT
MKRDEGVCSASGSCSDICVTSTQSDFFTCLCPTNTFNELTIDRLSCQEPNSYLLFADIDG
IKMVPQGSTGDNQVYTIVYPSADCSHFYGLVVDDNQQYIYFSALQGNSIFRANVDGSDVQ
KFVTDANGKITSLALSRGDLFWTTTNTNDNSTGAIVHCNTEDTSRTVTVLYNTTAEPLDI
AADESNIYWTERGRSGVERFDRREFTARSSVDDEVQTSAIALTVPSRHLLYATDSTVIIR
RFPTTTGTTSFTSSLTDTIAESGARTLMATRQFLYLSRWWGNSTGSVRRHDLTSMRSYDV
TRAAVRPGQMVYISNQTPNVQGGILYTNKVGSCPSIGSCSGTACFLDVDCYGSSKCCGTS
QCTRCSVPEQGSNCVKDGVLIENSGGAVDFGCEKCSCLNGNLTCDRLACPDLGSCPTENK
IQPPSGSCCPLCSAITVCSSPPTIENCPASEKSLRLPSNSDRVNVTLDDIIFATTYGKSC
SGQKLKLDFTDTSIKYRPYLQMVTVSASDKHGTATCKISVNVIDNTKPAFDSCPSGVLQM
YVTKSNRVVTWSPITARDNSGDVKVTADTQNGIELSPGLYDIHYEAVDGSGNSEACSFSI
NVTMLQACKSPPIPFNGLLSCKDATELTCQLENCNAGYLNTLSVTTTHTCDQTSGQWVPP
FPSNFTNVCVKPAPLIIQREYIFEFSCPDFKFDGLDLQQCISNARLCPRDDIKLCDRPFK
QIGSSVVSNSRIVMWMEGVLPYGGDMVGLTTRMNNTGNMIKEFFQTGDFETKCPRISCAF
SRATSEPDTRKCEVGSKTFLVSGKEICAPCPAGWYFANGDCSECPANTYQERSGQTMCMP
CPERGFSAIGSFLQSHCNINDPLVTSEQTDTFVIKIVAVAVGILIVILAAVSIVCFVRRK
RVSQKYPSGGNFENPVFMGHGNEAFAGPSVDEYDHITAYKLQPVTQTQNLKTKEGDGYYE
EGATLPNEDHACQSSEAASNRDLNKAIQEADYSHFDDFDSPNERLLADSDVKKNNVYSIV
QRS
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtgtttcttgtgtttggtgctctgtggtacaaagtgctttgtgaagagttg
tatgtaaccactccaacgtctgtcttgcacattgatacatcaacttcacaaacatcaact
attgttaccaaggagaatgggcgtctgctaggtttggctgcagactggcgtggggagaga
ctgtattacacggacgtgtcacctacagggggcggtatctacaccgccaacctacaggga
ggggacgtcagaaaactaccaatacaataccctggcatggaacccgtggggctggcggta
gactgggtgtacggacacctgtactggacagataccgtctacagggccgttatgatgtca
aaccttgacggcacgggacgcgtaacaatagtgacagaaaagttgatcaccccccgtggt
attgctgtcgacccgaaaagaagagaactatacgttggcgaccaaggcaaacatgctgta
cagctttgtgggttagatggaaggaactgccgggaactcaacgtcactgacgacagcgcc
accttctggccaaatcagatcataattgactacgcctctaaaaaagtacattggatagac
ggttgggtaccagccttgtattcttgctctgttgggggcactgactgccaaaggaagact
gggaacctctccacagaacttggttctaacccagcgtttggtcttgctgttggtcagagt
ggccagttgtatttgtccacacttcacaaccaatcgttatataggtccagtcttgatctt
gagctgactagcgtacagatagcatcttcagacaccaagatgttcttcttgctccgaaaa
gaacctgcttctaaccaaccaacagtggtcacttcgcacccttgtgccaccaataaaggg
ggctgctcagacatctgtgttccccattcgggggacagcttcacctgcatgtgtcctgat
gcatcggggaaactaccggtcaacaaaatatgtcaacccccaaaccagtttcttctcttt
acggatatatcaaagggcattgtgggattggctaatgttgatgattctgaaattcaaacg
acaataatgcgagcggttaaaccgttggcagtgacttaccaccaaaatgaaaagaaagtt
tactttgccgatgctcgtcttcgaaccatctacaaatgcaacctagacggaagtgacgta
gagacagtactaaacagttctcatggaataggccaagtggaaggtctgtccatcgattat
cgtcaaaaccgactctacttttctaacatgggttttgaggagtatgatggggtgctgaga
tcatggcatactattgagatggtggacttggatactaaaaaaagacggaccatcgttaca
tcattagagaaacccagggctgtagtggtggattcagaccgccgagttctgtactacacg
gactggggaagtgcaggtcacgtgggtaaggtggcgttggatggttccaatagggtggtg
ctaactacagcggagaaccctaatgacctgatcatctctgacaataagttgttgatcatc
aacaacaagcagccgacagcagaaatcatagaaatagacctggccaactctaatagtgca
attagcagacgtcaactttcttctgtggaacccctgtctcttgctgtttctggggataac
cttctagtcagctcttttaccggaggtctcaatatctacagcaagcccagtctcggtcag
acctacagctcatccttcggacactttacacgaatgatcgtggtggacacaacggacacg
atgaagcgagatgaaggagtgtgttcggcttctggatcctgttccgacatttgtgtgacg
tcaacacaatcagattttttcacctgcttatgcccaaccaatacattcaacgaactaaca
attgaccgtttgtcctgtcaagaaccgaactcctacttattatttgccgacattgacggg
atcaaaatggtcccacaaggcagtacgggcgacaaccaagtctataccattgtgtatcct
agcgccgactgcagccatttctatggtcttgtagtggatgataatcaacagtatatctac
ttcagtgctctacagggaaattcaattttccgcgctaatgtagatggttcggatgtgcag
aaatttgtgaccgatgcaaatggcaaaataacaagtctagctttgtctagaggcgacctc
ttctggacaactacaaacacaaacgataactccaccggtgctattgttcactgtaacaca
gaggataccagcagaactgtcactgtactgtacaataccacagcggaacctctagatatc
gcagctgatgaaagtaacatttactggacagaaagaggtcgctctggggtagagcgattc
gacagacgtgaattcacggcacgctcctcggtagatgacgaggtccagacttctgccatt
gccctcactgttccctccagacatctcctgtacgccacggactctacagtgataattcgg
cggttcccgaccaccactggcaccaccagttttacctcatccctgacggacactatagca
gagtcaggggcgagaactctgatggccacgagacaattcctgtatctgtctcgatggtgg
gggaacagcacggggtcggtaagacgacatgacctcaccagcatgagaagttatgacgtc
acgagagctgctgtccggcctggacagatggtttatatatcaaaccagacaccaaatgtg
caaggtggaatcttatatactaataaggtgggtagctgtccctccattggatcctgttca
ggcacggcctgtttcctggacgtggactgttacggtagctctaaatgctgtggtacaagt
caatgtaccaggtgttcagttccagagcaagggtcaaattgtgtcaaggatggagtctta
atcgagaattctggaggtgctgtggattttggctgtgagaaatgttcctgtttgaatggt
aatcttacctgtgaccgacttgcctgtccggaccttggttcatgtccaacagagaacaaa
atacaaccaccatctgggtcatgttgccctctgtgttctgcaataacagtttgttccagt
ccccctacaatagaaaactgccccgcctctgaaaaatctcttcgcctacccagcaacagt
gatagggtcaatgtaactttagatgacatcatctttgcaacaacctacggaaaaagctgt
tctggacagaaattgaagttagatttcactgatacttcgataaaatatcggccgtacctt
cagatggtcactgtatctgcctcagataaacacggcactgcgacatgtaaaatttccgtg
aatgtcattgataatacaaaaccagcttttgattcctgtccgagtggagttttacagatg
tatgtaacgaagagcaatagggttgtcacgtggtccccgattactgccagagataattcg
ggtgatgtaaaagttactgcagatacacaaaatggcatagagctatcgcctggtttatat
gatattcattacgaagctgtagatggttcaggcaatagcgaggcttgttcattctcgatt
aacgtcaccatgcttcaagcttgcaagagcccaccaatcccattcaacggtcttctgagt
tgtaaagacgccactgagctgacatgtcagttggagaactgtaatgctggctatttgaac
actttgtccgttacaacaacccacacctgtgatcagactagtggacagtgggtccctccg
tttccttccaattttaccaacgtctgcgtcaaacccgcaccgttaatcattcagcgggaa
tacattttcgaattcagttgtccagatttcaaatttgatgggttagatctacagcagtgt
atttccaatgctcgcctttgtccaagagatgacattaaactttgtgataggccattcaaa
caaatcgggagctcagttgtctcaaatagtcgtatagtgatgtggatggaaggagttcta
ccgtatgggggtgacatggtgggtctaactaccaggatgaacaatactggaaacatgatc
aaagaattctttcaaactggcgatttcgaaacgaaatgtccgagaatttcatgtgctttc
tcgagagcaacgtctgaaccagatactagaaaatgtgaggttggctccaagacctttctt
gtttcgggaaaagagatttgtgccccgtgccctgctggatggtattttgcaaatggcgac
tgttcagagtgccctgccaacacgtaccaggaacgctccggacagaccatgtgtatgcca
tgtccagagagaggtttctccgcgatcggttctttcctccaatcacattgtaatatcaat
gacccacttgttacctcagaacaaacagatacgtttgtgatcaaaatcgtagcagttgcc
gtgggaatattaatagtcattctagctgccgtgtccattgtgtgcttcgttaggagaaag
agagtatctcaaaaatatcccagcggaggaaattttgaaaacccagttttcatgggccat
gggaatgaggcatttgcaggtcctagtgttgacgaatatgatcatattacggcgtataag
ctgcaacccgtaactcagactcaaaaccttaaaactaaagaaggagatgggtactacgaa
gagggagcaactctgcccaatgaagatcacgcttgccaaagttcagaagctgcttcgaac
agggatttaaacaaggcgatccaagaggccgactacagccactttgatgacttcgacagt
ccaaatgaacgactgttggctgacagtgacgtgaagaagaacaatgtgtacagcattgta
cagcggtcctaa
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