Magallana gigas (Pacific oyster): 105344772
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Entry
105344772 CDS
T03920
Name
(RefSeq) DNA repair protein complementing XP-C cells isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
105344772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105344772
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
105344772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
105344772
NCBI-ProteinID:
XP_065937380
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Position
4:11858188..11877075
Genome browser
AA seq
1118 aa
AA seq
DB search
MPPRKGSKQKTEKRTKSTQGNAINNENDIKQVKLSKDRAADYGVNSERRNDSQTVQKPAK
RKRGDDKKGNPVPKGETELSRDNKGNINVSKTPGGETSEHNEETNKKGRKRITQSSGKSK
DEPKAKKGRRKQTETVEIQRSAKRTRTKKTLGTVVDESTIESKIKKEEQTETTGNVKTEA
VPENNTKNLSVTIDNDNDDDDVGVMSSTDDEDDEDDDFEPVMKKLKVPLQTNRVERRSAK
DQKSYVKESLPISQNVTEKTKKKPVGKAQKKSKDNVNLGTKIKNTRQSKTSSLKKEKTNK
HSYDSTTESQTPVINKTCPTNGVHSKICHGNVQKIDQSDVMSILLHMEGGSDMAGPSGPC
TRDSGSEGGSVEDSEEDSDWEEVKDLGGSPQKSQIPKDPVEVILEAPNFLKKRKKKGFDW
KAYVQRQINRFNKELTEDIHKVHLMCLLMRGRYLNQVCNNPVLRGVALSFVPSEMSKVTV
RKFDVSAHTRLMNWFREAVSIDLQLAEDAQSNLVQSLIKGMETRKVTSPLEYVLVYLIML
RCLGVKARLVTSLQPLPLKNTKKVENTKKINIKGNPAAIKKPIKSKSDSKAEGKLDTKSK
KKGTTGKKPERERKKQKASKPDSVSHASRTLKTKNKKLRKRGSKVRPDSYHDNSDVDDSD
EDFEPENISESEPEVDDSRKRKKKSLSNSVKSSQSPGRSDEDSDFMEEMVQFRSPVRKPQ
SGEKKNRKVLSSDSENESTASNHGCDEWVEVFIEAEKSWICIDCIRGHINRPYRIESAAT
QPVHYVVAYNEEGEWKDVTARYASKWMTETRKLRVDPEWWSETLDVFRCEEDSTEDEEIK
ANLMKRPLPTSVSAYKSHPLYALRRHLLKYEAIYPETAAPLGYIRGEPVYARECVHELHS
RENWLKEGRAVRIGEEAYKMVKSRAKWNKPKVDPEALDLELFGFWQTEEYIPPPAVDGKV
PRNAYGNIELFKPSMLPAGTVYLKVPGLNKVAKKLNMDCVPAMVGWDSHCGFSHPVLEGF
VVCEEHKDILLAAWDEEQEIQKQKEAEKKEKRAVGNWKLLIKGLLIKERIKKRFNLMEKD
EEQDTKQKPKGKIATDAEKSWPRKHQQSKKLSHSQETM
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgccaccccgaaaaggtagtaaacagaaaactgagaaacgaacgaaaagtactcaaggt
aacgccatcaacaatgaaaatgacattaaacaggtcaaattatctaaggatcgagcagca
gattatggcgtaaatagcgaaaggaggaatgattcacaaactgtacagaagccagcaaag
agaaaaagaggtgatgacaagaagggtaatccagttccgaagggagaaacagaattgtct
agggataataaaggtaatattaatgtgtcaaaaacacctggaggtgaaacttcagagcac
aatgaggaaactaacaaaaaggggaggaagcggatcacgcaatcttctggaaaaagtaag
gatgaaccgaaagcaaaaaaagggagaagaaagcaaactgaaactgttgaaattcagaga
tctgcaaagagaacaagaacaaagaaaacattaggcacagttgttgatgagagtacaatt
gaaagcaagatcaagaaagaagaacaaacagagactactggtaatgtaaaaactgaagct
gtcccagagaacaacacgaaaaatttgtcagttactattgacaatgacaatgatgatgat
gatgtcggtgtgatgtcatcaactgatgatgaagatgatgaggatgatgattttgaacca
gtaatgaaaaagttaaaggtcccattacaaacaaatagagttgaaaggagatcagcaaaa
gaccaaaaaagctatgtaaaagagtctctgccaatctctcaaaatgttactgagaagacc
aagaaaaagcctgttggcaaagcacaaaaaaaatcaaaagacaatgtgaatttgggtacc
aaaattaaaaatactcgtcaaagtaaaacttcctcattaaaaaaagagaaaacgaataaa
cactcctatgattctaccactgaatctcaaactcctgtcatcaataaaacttgcccaacc
aatggtgttcattcaaaaatctgccatggaaatgtacagaaaattgaccaatcagatgta
atgtctattcttcttcatatggaggggggaagtgacatggctggtccgtcagggccgtgt
acaagagattctgggagtgaggggggtagtgtggaggacagcgaggaagactcagactgg
gaagaggtcaaagatcttggaggcagccctcagaaatcccaaattccaaaagacccagtg
gaagtgattctggaggctccaaactttctcaagaaaagaaaaaagaaagggtttgactgg
aaggcgtatgttcagagacaaattaatcgattcaacaaagagctgacagaagatattcat
aaggtacatctgatgtgtttgttaatgaggggtcgatacctgaaccaggtgtgtaacaat
ccagtcctgaggggtgttgcgttgtcttttgtgccctctgaaatgtccaaggtcacagtc
agaaagtttgatgtctcagcccacacccgcctaatgaactggttcagggaggcagtcagt
attgatctccagctagcagaagatgcccagtccaacctggtgcaaagtcttataaaagga
atggagacaagaaaagttaccagcccactggaatatgttctggtatacctcatcatgtta
cggtgcctaggtgtgaaggctagactggtgacctcattgcagcccctcccccttaaaaac
accaaaaaagtagaaaatacaaagaaaattaacatcaaaggcaaccctgccgcaatcaag
aagcccatcaaatcaaagtcggattcaaaagctgaaggaaagttggacacaaaatcaaag
aaaaagggaactacaggcaagaaaccagagagagagagaaagaaacaaaaggcaagcaaa
ccagacagtgtgtcacatgcctcaagaactctcaaaaccaaaaacaaaaaactcaggaag
cgtggctccaaagtgaggccagacagttaccatgacaacagtgatgttgatgactcagat
gaggactttgagccagaaaatattagtgagagcgaaccagaggttgacgatagcagaaaa
aggaagaaaaaatctttaagcaactctgtcaagtcaagccaatcacctggcagatccgat
gaggattctgactttatggaggagatggtacaattcaggagcccagtcagaaaacctcag
tcgggggagaaaaagaacaggaaagtcttatcatccgactcggaaaatgaatccactgca
tcgaatcatggttgtgatgaatgggtggaagtttttattgaagcagaaaaatcttggatt
tgcattgactgcatacgaggacacatcaatcgaccttatcgtatagagagtgcagccact
cagcctgtgcattatgtggtggcctacaatgaagagggtgaatggaaagatgtgacagcg
agatacgcctccaagtggatgacagagaccagaaagctacgggtggatccagagtggtgg
agcgagaccctcgatgtgttcaggtgtgaggaggacagcacggaggatgaggagatcaaa
gctaacctgatgaagcgccctctacccaccagtgtttcagcatacaagagtcacccatta
tatgcacttaggagacatttattgaagtatgaagccatttacccagaaacggcagcacct
cttggttacataaggggagaaccagtctatgccagagaatgtgtgcacgagttacattca
cgtgaaaactggttgaaagaaggaagagctgttaggattggggaagaagcctataagatg
gtgaaatcaagagcaaaatggaataagcctaaagtggatcccgaggcattggatctggaa
ctgtttggattctggcagacagaagagtatattcctccacctgctgtagatggaaaggtt
cccagaaatgcctatggcaatattgaactcttcaagccctctatgttaccggctggtact
gtgtatcttaaagtcccaggcttgaataaggtggccaagaagttgaacatggactgtgtg
ccggccatggtgggctgggattcccactgtggattctcccatccagtgttggaggggttc
gtggtgtgtgaggaacataaagacattctactggccgcctgggacgaggaacaagaaatc
cagaaacagaaggaggcagagaaaaaagagaagagagcagtaggaaactggaaactgttg
attaagggcctgctgatcaaagaaagaattaagaagagatttaacctgatggaaaaggat
gaagaacaagacactaagcaaaagccaaaaggcaagattgcaactgatgcagaaaaatcc
tggccacgaaaacatcagcagtccaagaagttgtcacacagtcaggaaaccatgtaa
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