Magallana gigas (Pacific oyster): 105345244
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Entry
105345244 CDS
T03920
Name
(RefSeq) nuclear valosin-containing protein-like
KO
K14571
ribosome biogenesis ATPase
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105345244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crg03009
]
105345244
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
105345244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Nucleolin_bd
AAA_16
RuvB_N
AAA_22
TIP49
AAA_14
AAA_5
AAA_2
AAA_28
RNA_helicase
Mg_chelatase
AAA_18
AAA_33
ATPase
ABC_tran
nSTAND3
IstB_IS21
Rad17
NACHT
NPHP3_N
AAA_3
TsaE
AAA_17
Vps4_C
NB-ARC
Viral_helicase1
Zeta_toxin
AAA_7
ATP-synt_ab
DUF815
Motif
Other DBs
NCBI-GeneID:
105345244
NCBI-ProteinID:
XP_011451641
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All DBs
Position
6:41349759..41374005
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AA seq
1012 aa
AA seq
DB search
MMKRKFNEGKGAQNPEQKRPRSQSGYIGDPRLVPRVRQYLAAQKSKNVNVSSMAEDLQRQ
YGEYGRKKKNAFYKSVEKAYEIIRRKDSDNLSRLEQKHLGKRRTTSSSESDSDSDVIADD
SDASFSDDNPDYINYQESNAMNNMMSSFYRNVAGPSTSAMPSSMIGPGDLVLDPDFRMSQ
SGGSDACITIDDSSESDSEVASTSQKSSTAFFVDRVGERPQLTVVKDSGLGDTSSQGEIL
DVSVCLPPPPLLKVQSTEKLKNKKKSEKLDEKNEKEVKRKENEDVDSGRKTPKTTKGKKS
SADGDKKEKKSKSGIEVQTSGVTFADVGGNDNVLMDICKLLVHMRHPEVYKQLGIIPPRG
ILLHGPPGCGKTLLAHAIAGELSLPFLKIAATEIVSGVSGESEEKIRDLFEQAVIAAPCV
LFIDEIDSITPKRETASKDMERRIVAQLLSCMDDLNKKEDAHVLVIGSTNRPDSLDPALR
RAGRFDKEICLGIPDEKARARILRVLCRNLTLSSEFDYESIAKNTPGYVGADLTALTREA
AMLAVNRVFKDLQSQPGFISNVNGCCSGESNSVKTVQNGQATESNLSNRTTVDTTESTSQ
CVTQIIEKTVSKDSSHTERDQKQSESSSGGNSTQDLTVTAPNNKGDNSDNANDSSEVVSC
GNGSESLKQDIASGQKTNIDKNLQLEYLLHLLKNQPPLSGDQLQGMAISMQDFQESIKHV
QPSAKREGFATIPDVTWEDIGALKEVREDLQLAILAPVRYADQFQSLGINRAQGILLSGP
PGCGKTMLAKAVANESGINFISVKGPELLNMYVGESERAVRQVFQRARNSAPCVIFFDEL
DALCPKRSDGGEGGSSVRVVNQLLTEMDGLEERKQVFIMGATNRPDIIDPAILRPGRLDK
VLFVGLPTPSDREEILKTITKDGTHPRLADDVDLKEIANHPKCDCYTGADLAALVREASI
CALRTVMKSFHKGGQPVIVNKSHFDEAFVRVKPSVQAKEREKYAKMEEKMKN
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaacgaaaattcaacgaaggaaagggcgcacagaaccctgagcagaaacgacca
aggagccaatcgggttacattggagacccaaggcttgtcccacgtgtgagacaatacctg
gctgctcagaagtccaaaaatgtcaatgtcagctcaatggcagaagacctccagagacag
tatggggagtatggaagaaagaagaaaaatgcattttataagtctgtggagaaagcatat
gaaattataagaaggaaagactctgacaacttgtcaagattagaacaaaagcatttaggc
aagaggaggaccacatcctccagtgagtcggactcggattccgatgtaatcgcggatgac
agcgatgcaagcttttcagatgacaatccggactacatcaactaccaggaatctaatgcc
atgaacaacatgatgtctagcttctacagaaacgtggcaggacccagcacatctgccatg
ccttcatccatgataggtccaggcgatttggttcttgaccctgacttcagaatgtcacag
tcgggggggtcagatgcctgtatcactattgacgattcctcagagtcggacagtgaagtt
gcttctactagccagaaatcctccactgccttctttgtggatagagttggagagcgacct
caattaactgtggtcaaggactctgggttaggtgatacaagttcccagggtgagatattg
gatgtctctgtttgtctgcctcctcctcctttactgaaggtgcaatcaacagaaaaacta
aaaaataagaaaaagtctgagaaactagatgaaaaaaatgaaaaggaagtaaagaggaaa
gagaatgaggatgtggactcaggaaggaaaactccgaagacaactaaagggaagaaatcc
agtgcagatggtgacaaaaaagagaaaaaatcaaagtctggcattgaggttcagacatct
ggtgtaacatttgctgatgtaggaggcaatgataatgtgttaatggatatctgtaagctg
ttggtacatatgagacatccggaggtctacaaacaactcggaatcatccctccacggggc
attcttcttcacggaccaccaggctgtgggaaaacactgctggctcatgccattgcaggg
gagctgagtttaccgttcctgaaaatagcggccactgagatagtgtctggtgtatcaggg
gaatctgaggagaagatccgcgacctttttgagcaagctgtgattgctgctccttgcgtt
ctgtttattgatgagatcgactccattacccctaaacgtgagaccgcctccaaggacatg
gagaggagaatcgtggcccagttattgtcctgtatggatgatttaaacaagaaagaagat
gcccacgtattggtgataggttcaactaaccgtccagattcactagatcccgctctaagg
cgagcgggacggtttgacaaggagatctgtcttggaattccagatgagaaagccagagca
agaatattgagagtgctgtgtcgtaacctgactctgagctcagagtttgactatgaaagc
atcgccaagaacaccccggggtatgtaggagctgaccttactgcactgaccagggaagct
gcaatgttggcagtcaacagggttttcaaggatcttcagtcacagcccggatttatcagc
aatgttaatggatgttgttctggtgaatctaacagtgtaaaaacagtacaaaatggtcag
gcaacagaatccaacttgtccaatcgaacaactgttgataccacagaatctacaagtcaa
tgtgtaactcagatcatagagaagacagtttctaaggactcatcacatacagagagagat
cagaaacagagtgaatcaagtagtggtggtaacagtacacaagatcttacggtgactgct
cccaataacaagggggataactcagacaatgctaacgatagttcagaagtggtctcatgt
ggaaatggctcagaatcacttaaacaagatattgcatctggacagaaaaccaacattgat
aaaaaccttcagctagaatatttattgcacttattaaagaaccaaccacctctgtcaggg
gaccagctacagggaatggccatttctatgcaagactttcaggaatccattaaacatgtc
caaccctcagccaaaagggaaggatttgctacgattcctgatgtaacttgggaagacatt
ggagcattgaaagaagtcagggaagatctccagctagccattcttgcacctgttcgctat
gcagaccaattccaaagtctgggaataaatagagcccagggaattctgctgtctggaccc
ccaggatgtggaaagaccatgttagccaaagctgtggcaaatgaatcaggaattaatttc
atatccgttaagggaccagaactactaaacatgtatgtgggtgagagcgagcgggcagtt
agacaggtgttccagagggccaggaactcagcaccctgtgtcatcttctttgatgagctg
gatgctttatgtccaaaaagatctgatggaggggagggtggctccagtgtacgtgtggtg
aaccagctgctgacagagatggacggtttggaggagaggaagcaagtattcatcatgggt
gccacaaatagaccagacatcatagatccagccatcctcaggcctgggcgactggacaag
gtgctgtttgttggactacccactccaagcgacagagaggaaattctgaaaaccatcacc
aaggacggtacacacccacgtctggcagatgatgtggatttgaaagaaatcgctaaccat
ccaaagtgtgactgctatacaggagctgacctggcagctttggtgagagaagcatccatt
tgtgccttaagaactgtaatgaagagttttcacaaagggggacaacctgtgattgtcaac
aaatcccactttgatgaagcatttgttcgtgttaaaccatcagttcaagcaaaggaaaga
gaaaagtatgccaaaatggaggaaaagatgaaaaattga
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