KEGG   Magallana gigas (Pacific oyster): 105345645
Entry
105345645         CDS       T03920                                 
Name
(RefSeq) coatomer subunit beta' isoform X1
  KO
K17302  coatomer subunit beta'
Organism
crg  Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crg04131]
    105345645
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crg04147]
    105345645
Membrane trafficking [BR:crg04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    105345645
Exosome [BR:crg04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   105345645
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st PEP5_VPS11_N NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st WD40_RFWD3 BBS2_Mid Beta-prop_Vps41 Beta-prop_LRRK2 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Clathrin WD40_2
Other DBs
NCBI-GeneID: 105345645
NCBI-ProteinID: XP_034336383
LinkDB
Position
3:54965809..54978371
AA seq 942 aa
MPLRLDIKRKLSARSDRVKSVDLHPTEPWMLASLYNGNVHVWNHESQQLIKSFEVCDLPV
RCSRFVPRKNWVITGSDDMQIRVFNYNTLERVHQFEAHSDYIRSIAVHPTQPFILSSSDD
MLIKLWDWDKKWACNQVFEGHSHYVMQIVINPKDNNTFASASLDRTVKVWNLGSNTPNFT
LEGHEKGVNCVDYYSGGDKPYLISGADDRLIKIWDYQNKTCVQTLEGHAQNISAVAFHPE
LPIIMTGSEDGTVRIWHANTYRLESTLNYGLERVWAIAAQKGSNNVALGYDEGSIIIKLG
REEPAMSMDSSGKIIWAKHSEIQQANIKAIGDQDMKDGERLPLAVKDMGSCEIYPQTVAH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWGSDSSVYATRESTSSVKIFKNFKE
QKAFKPEFGAEGIYGGFLLGTRSVSGLAFYDWESTELIRRIEITPKNVYWSENGELCCIT
TDESFFVLKYNPEAVEKAQGNREEIGEDGIEEAFDVVGEIDETVKTGVWVGDCFIYTNSV
NRLNYYVGGEIVTIAHLDRMMYLLGYIPKDNRLYLGDKELNIVSFSLLVSVLEYQTAVMR
RDFETADKILPMISKEHRSRVAHFLEKQGFKSQALAVTCDPEHKFELAIQLGDLKTCYQI
AKEAESEQKWKQLAELAISKCEFGLAQECLHQASDFGGLLLLASSAGNAQMVAKLGDTAQ
KAGQNNVAFVSHFVLGRLEECLEVLINTGRLPEAAFFARTYLPSQVSRVVELWREHLAKV
NKKAANSLAEPQEYENLFPDWKNALKTEAYLKPQRQRAIPADKFPRVPPNHERVPVDEMQ
QAEEQGSFTFVRGPGDDDDDDAGDDFEQAPDTTEQSVRAPSPPPQKKETAPPDPAPSKTE
MDDIEKELELDLENMNIDNVDTSDLPSADQDINLDEEDLLED
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgcctcttcgacttgatatcaagcggaaattatcagcacggtccgatcgagttaagagt
gtagatttacatcccacagaaccatggatgttggcaagtttatacaatgggaatgtccat
gtgtggaatcatgagtcccagcaacttatcaaatcgtttgaggtttgcgatttacctgta
agatgttccagatttgttcccagaaaaaactgggtcatcaccggctcagatgacatgcaa
atccgagtgtttaactacaacacgctggagcgagtccaccagttcgaggctcactcagat
tacatcagaagcattgctgtccaccccacccagccattcatcctcagcagcagtgatgac
atgctgatcaagctgtgggactgggacaagaagtgggcctgtaaccaggtgtttgaggga
cactcccactatgtcatgcagatcgtcatcaaccccaaagacaataacaccttcgccagt
gcctcactggaccgaacagtcaaggtttggaatctgggatcaaacacacctaattttact
ctggagggacatgaaaagggagtgaactgtgtagactactattcagggggagacaaacct
tacttgatctctggagctgatgacagacttatcaaaatctgggattaccagaacaagacc
tgtgtgcagactttggagggacacgcccagaatatctcggccgtggctttccaccctgag
ctccccatcataatgaccggctcagaggatggtacagtaagaatctggcatgccaacaca
taccgactggaaagcacgctgaattatgggctggaaagggtgtgggccattgctgcccag
aaaggctccaataatgttgctctgggttatgatgaaggaagcatcattattaagcttggt
cgagaggaaccagccatgtctatggacagcagtggaaagatcatctgggccaaacactcg
gagatacagcaagccaacatcaaggctatcggagaccaggacatgaaggatggagagagg
ctccctctggcggtgaaggacatgggcagctgtgagatctacccccagacagtcgcccac
aaccccaatggcaggtttgtggtggtgtgtggggatggcgagtacatcatctacacggcc
atggcactcaggaacaagagttttgggtctgcccaggagtttgtttggggcagtgattct
tcagtgtacgccaccagagaatccaccagttctgttaaaatctttaaaaactttaaggaa
caaaaggcattcaaaccagaatttggggctgagggtatttatggaggattcctattgggc
acacggtcagtgagtggcctggcattttatgactgggagtccacagaacttatacgacga
atagaaataacaccaaaaaatgtgtactggagtgagaatggagagctgtgttgtatcact
acagacgagtcgttctttgtcctgaaatacaacccggaggccgtggaaaaagcccagggc
aacagggaagagatcggagaggacgggattgaggaagcgtttgatgtggtgggagagatt
gatgagacggtgaagactggtgtgtgggtgggagactgcttcatctacaccaacagtgtc
aaccggctcaactactacgtgggcggggaaatcgtcacaatagctcacctggatagaatg
atgtatttgcttggttacattccaaaagacaatcgcctgtacctcggagacaaggaactc
aacattgtcagtttctcactcctcgtctcggtgctggagtaccagacagctgtcatgaga
agagactttgaaaccgcagataaaatattacccatgatttctaaagaacacagatcaagg
gttgcccatttcctggagaaacagggctttaaatcccaagcgttagctgtgacatgtgac
ccagaacacaagtttgagctggccatacaattaggagatcttaaaacctgctatcagatc
gccaaagaagcagagtcagagcagaagtggaagcagcttgcagagcttgcgatcagcaag
tgcgagtttggtcttgcccaggagtgcctccatcaagccagtgactttgggggtctcctg
ctgctggccagctccgctgggaatgcccagatggtggccaagctgggggacacggctcaa
aaagccggccagaacaacgtcgccttcgtctcacactttgtccttggaagactagaggag
tgcctggaggtgttaattaacacaggacgtcttccggaggccgccttcttcgccagaaca
taccttcctagtcaagtctcaagagtggtggagttgtggagagagcatttagccaaagtc
aacaagaaggccgccaactctttggctgagccccaggaatatgagaacttgttcccagac
tggaagaatgccctcaagaccgaggcttatctcaaaccacagaggcagcgtgcaatcccg
gcggacaaattcccacgtgtcccgccaaatcacgagagggtccctgtggatgagatgcag
caggccgaggagcagggctcgttcacattcgtccgcggaccaggcgatgatgatgatgat
gatgcaggggacgactttgaacaggcccccgacacgactgaacaaagtgtcagggcgccc
tctcccccaccacagaagaaggaaacagcacccccagatcctgccccgagtaaaacagaa
atggatgacatagagaaggagttggagttagatctagaaaacatgaacattgacaatgtg
gacacctcagacctcccttctgctgaccaggacattaatttggatgaggaggaccttttg
gaagattaa

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