Magallana gigas (Pacific oyster): 105345676
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Entry
105345676 CDS
T03920
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105345676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105345676
03012 Translation factors [BR:
crg03012
]
105345676
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105345676
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105345676
Translation factors [BR:
crg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105345676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
nSTAND3
AAA_22
AAA_19
ResIII
AAA_14
ATPase
AAA_23
TsaE
Motif
Other DBs
NCBI-GeneID:
105345676
NCBI-ProteinID:
XP_034336006
LinkDB
All DBs
Position
3:37710932..37729546
Genome browser
AA seq
1101 aa
AA seq
DB search
MYKRQFLEKILSNGLKSDCIIKLPYSMSWHGRRGGWRDDHENRDRQQHRGYRDGPRGHDR
YTDNNDEGQGEAPLHNDRWRNRGYGRPGYGRGRGRNNDNKGGGRRGGRPEGLRGRDIGMF
YAARSKAKMKEREFQERPLVAMETSDMTKIQRVLDLVKDSPEERESGTELRQRPVTAPQK
TTSMTWQNRHEGRPSSSRGASNVIEGPGGLESTTSTEEKEDSATSSVKEEEEEGLILPNM
EEIKELSEEIEQILPSDFDFEFEEEIESQPYLDASFKEEMEEKIKSSKYMKMLSSRKRLP
AYKQRQEIIDLVNSNQIIVLSGETGCGKTTQVPQFILDDYIEKGKGSLCNVVCTQPRRIS
AISVAERVADERGEKQLEQSSVGYSIRLENRLPRKNGSILFCTTGIILRRLESDQKLKSV
SHIIIDEVHERDLLCDFLMVVVKDLVALRPDLRVIVMSATLNAEKFSQYFNNCPHINIPG
FTFPVKQHFLEDVIQLTKYRPDPEPTQRHKSKRYPKWKKYMMEEEEQEEWNMKAWARNLP
TDQYSPNTISALTQIDTKKINLDLVMELLRHIVNKMEDGAVLVFVPGWKEISDLNKLLLE
DSRINSRDLRIVPLHSLMPTVNQRDIFERPPAGIRKIVIATNIAETSITIDDIVYVIDCG
FVKVKDFNPEKGLQTLESFPVSRANAQQRKGRAGRVQAGHCFHLFTSLQYAEMKEYIAPE
ILRTRLEELCLMIKILKLGKIESFVNKALDVPSAEAVKAAIVNLQNLQALDDNEELLPLG
YHLARLPLDPHTGKMILFSAMFGCLDPICLIAACLNFKSPFFTPLGKEAQADRCRKALAG
DSPSDHIMLLKAFKKWEIASRNGNGRKFCYDNFMSENVCKMLMKMKKQFAELLYNIGFVN
SLDPRNKVANIHSDNENLITAVICAGLYPNIAKVHRVAKPNRSTVSVILQNGTKGYLHKG
SVNANETYFPSKWLIYHKVMKTMAVNVYDCSVVSPYPLLFFGGKISFSVTNVKGRDRECV
EIDGWIPFWTERATYDLVKDLRKQLDKILEDRIVSPRAVDLTVSSKEQVIINAIVDLISK
EEVTHHDFRDDDQWDSNEVDY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgtacaagagacaatttcttgaaaagatattgtcaaacgggttgaagtctgattgtatc
attaaattaccatacagtatgagctggcatggacgaagaggtggatggcgagatgaccat
gagaacagagacagacagcagcaccgtggttatagggatggacccagggggcatgacaga
tatacagataacaacgatgagggacaaggggaagctcctctacacaatgacagatggaga
aatcgtggttatggtagaccaggctatgggcgggggcgtggcaggaacaatgacaacaag
ggcggcggaagaagaggaggcagaccagaagggctcaggggacgagatattggaatgttt
tacgcagctcgaagcaaggcaaagatgaaggaaagggagtttcaagaaagaccccttgtt
gccatggaaactagtgacatgacaaaaatccaaagagtattggatttggtcaaggatagc
ccagaggaaagggagagtggaacagagttgaggcagagacctgttacagccccacagaaa
acaacatctatgacttggcagaatcgtcatgaaggaagaccttcctcatcaagaggggcc
agcaatgtcatcgaaggacctggtgggctggaatcaacaacgtcaacagaggaaaaggag
gacagtgccacttctagtgtgaaggaagaggaggaggaggggcttattctacccaatatg
gaggagatcaaggagctttctgaggagatcgaacagattttaccatcagactttgatttt
gagtttgaggaagagattgaatctcagccttatcttgatgcaagctttaaggaagagatg
gaggaaaaaataaagagttctaaatatatgaaaatgttatcaagtaggaaacgcctacct
gcttacaaacagcgacaggaaatcattgatctcgttaactcaaaccagatcattgtgttg
agtggtgaaacagggtgtggcaaaactactcaggttccacaatttatattagacgattac
attgaaaaaggcaaagggtctttatgcaatgttgtttgtacccagccacgaaggatatca
gctatttcagtcgctgagagagttgctgatgagagaggagaaaagcaattagagcaatca
tctgtaggctactccataagattagaaaatcgcctaccaagaaaaaatggctccattttg
ttttgtactacaggcattatcctaagaagactagagtctgatcaaaagttgaagtctgtg
tctcacatcatcattgatgaggtgcacgagcgggaccttctctgtgatttcctgatggtg
gtcgtgaaggacttggtggctctccgtccagacctgcgtgtcattgtcatgagcgctacc
ctcaatgcagaaaaattctcacagtatttcaataactgtcctcacatcaatattcctgga
tttaccttccctgtcaaacaacatttcctggaagatgtgattcaacttacaaagtataga
cctgatccagaacccacccaaagacataaatctaaaagatatccaaaatggaagaagtat
atgatggaggaggaggaacaagaggagtggaacatgaaggcctgggccagaaatctgccc
acagatcaatactctccaaacacaatatcagcactgacgcagatagatacaaagaaaatt
aacttggatcttgtcatggagctattgcgtcatattgttaacaaaatggaggatggagct
gtgttagtttttgttccaggatggaaagaaatatcagatttgaataagcttttattggaa
gattcacggataaattctagagatctgcgcattgtgcctcttcactctctgatgcccact
gtgaaccaaagagacatttttgaaagacctcctgcaggaattcggaagattgtcattgct
accaacatagcagagacaagtataactattgatgatattgtgtatgtcattgactgtggc
tttgtgaaggtcaaggactttaacccagaaaaaggacttcagactttggagagttttcct
gtatcacgtgctaatgctcagcagcgcaaaggcagggctgggagagtgcaggctggccac
tgtttccatctgttcacaagccttcagtatgcagaaatgaaggagtacatagctccggag
atactaaggaccagattagaggagctttgtttgatgataaagatactgaaattgggaaag
atagaatcttttgtcaacaaggctctagatgttccttctgcagaggccgtgaaagccgcc
attgtcaacctacaaaatcttcaagctttggatgacaatgaagagttgcttcccttgggg
tatcacctggctcgacttccacttgaccctcacactggcaaaatgatcctgttttctgcc
atgtttggctgtctggatcctatctgcctgattgctgcctgcctcaatttcaagtcacct
ttttttacccctctgggcaaagaagctcaagcagatcgatgcaggaaagcccttgctgga
gacagccctagtgatcatatcatgctgcttaaagccttcaagaaatgggaaattgcttca
aggaacggaaatggtagaaagttttgttatgataatttcatgtctgagaatgtatgcaag
atgttgatgaaaatgaaaaagcagtttgcagagctgttgtataatattggatttgtaaac
tctctagatccaagaaataaagtagctaacattcattcagacaatgaaaacttgataact
gctgtgatatgtgctgggctttatcccaatattgccaaagtccatagagtggccaaacct
aacagaagcactgtgtcagttattctgcagaatgggaccaaaggttacctccataaaggg
tccgttaatgccaacgagacatattttccatcaaaatggctgatttatcacaaagttatg
aaaacaatggcagtgaacgtttatgactgtagtgtggtttcgccataccctttgctattc
tttggcggcaaaatttcattctctgttacaaatgtgaaaggaagagacagagaatgcgtg
gaaattgatggttggatccccttttggacagagagagcaacttatgatctagtcaaggac
ctaaggaaacagttggataaaattctagaggacagaattgtgtcaccacgggcggttgat
ctgacagtcagctccaaggaacaggtcatcattaacgccatcgtcgacctcatctccaag
gaggaggtcacccatcacgacttcagggacgacgaccaatgggactctaatgaggtggat
tactga
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integrated database retrieval system
