Magallana gigas (Pacific oyster): 105346630
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Entry
105346630 CDS
T03920
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105346630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105346630
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105346630
mRNA degradation factors
5'-3' decay
Lsm complex
105346630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SHNi-TPR
SPT2_N
Motif
Other DBs
NCBI-GeneID:
105346630
NCBI-ProteinID:
XP_011453607
UniProt:
K1PSZ4
LinkDB
All DBs
Position
8:complement(24575267..24578134)
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AA seq
133 aa
AA seq
DB search
MNYLPGTASLVEEIDKKLLVVLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLENENNPQLEEVPIDDILEMQREEQIQKQQEEERKKKSMLER
GLQPHSELHDDLF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattaccttccaggaacagctagtttggtagaagagatagacaaaaaacttcttgtt
gtgctcagagatggtagaactctaataggatacctccgaagcattgatcaatttgctaat
cttgttttacaccggactattgaaagaattcatgttggtaagaagtatggagatatacca
agaggaatatttgttgtaagaggagaaaatgtagttttgcttggagaaatagatttggaa
aatgaaaataacccccaactagaagaagttccaatcgacgatattctggaaatgcagcga
gaagaacaaatacaaaaacaacaggaagaggagcgcaagaaaaagtccatgctggagcgg
ggacttcagcctcattctgaactccacgatgatctattttaa
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