Magallana gigas (Pacific oyster): 105346737
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Entry
105346737 CDS
T03920
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03420
Nucleotide excision repair
crg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105346737
09124 Replication and repair
03420 Nucleotide excision repair
105346737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crg04121
]
105346737
03400 DNA repair and recombination proteins [BR:
crg03400
]
105346737
Ubiquitin system [BR:
crg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105346737
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
105346737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_SPT8
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_IFT122_1st
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Tricorn_2nd
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_Nup120_160
Beta-prop_WDR11_2nd
Beta-prop_ACSF4
Beta-prop_HPS5
eIF2A
Motif
Other DBs
NCBI-GeneID:
105346737
NCBI-ProteinID:
XP_011453754
UniProt:
K1PSM2
LinkDB
All DBs
Position
7:25711172..25714487
Genome browser
AA seq
405 aa
AA seq
DB search
MLKFLTARESGIDSPVVLRRIESTKRAYSLELSKHRDVESVFYGGINSLDIDPVESRYLL
SGTVSGTLHIHDLTNHSGEVKHTTKAVCNVSRSNTYKHKHSVETVQWYPLDTGMFLSSGT
DRTLKIWDTNSMKPADEYEFSGIVYSHHMSPVATTHCLVAVGCHSSTLKLVDLKSGSATH
MLKGHKKSILTVRWSPKNEYLLVSGSEDNRVLLWDVRSSKGSLMSLDQFNGQEVPTFLSA
CTAHSGNVNGMSFTMDGLHLVTSGTDNRIRLWNIETGRNTLVNYGKIQNETRKGLQFAVS
CWCKSDLIYIPDEYCNIQVYEMFTGRKIDTLRGHLQQVNCCVFHPDYQELYSGGNDRNVL
IWEPELDGSYDNYLKERSSKKQTQSRSFVSRIAATADSWSSDEET
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagtttctgacagctcgagagagtggcatagacagccccgttgtcctgagacga
atcgaatcgacgaaacgagcttactccttggagctcagtaaacacagagatgtagaatct
gttttttatggcggcataaactctctggatatagacccagtggaatctagatatctattg
tctgggacagtctctggaacattacacatacatgatctgacaaaccattctggggaagtg
aagcacaccaccaaagcagtttgcaatgttagccgctccaacacctataaacataaacac
agtgtggagacagttcagtggtatcctttggatactgggatgtttctgtctagtggaact
gacagaactctcaagatctgggacacaaatagtatgaagccagcagatgagtatgaattc
agcggcattgtgtacagtcatcacatgtctccagtggctacaactcactgcctggtggca
gtgggctgtcatagctcaacactgaagctggtggatcttaagtcaggctccgccactcat
atgctcaagggccacaagaagtccattctgacagtaagatggtcacccaagaatgaatat
ctactggtatctggcagtgaagataacagggtacttctgtgggatgtcagaagttctaag
gggtcactgatgagcctagaccaattcaatggacaggaagttccaacctttctcagtgca
tgcactgcacatagtggcaatgtgaatgggatgtctttcaccatggatgggctgcacttg
gtgacctccggcacagacaacagaatcaggctgtggaatatagaaacaggacggaacaca
ctggtgaattatgggaagattcaaaatgagaccaggaaaggcctgcagtttgcagtctcc
tgctggtgcaagtcagatctgatatacattcctgatgagtactgcaacatacaagtttac
gagatgtttacggggagaaaaatcgacacacttaggggacaccttcagcaggtcaactgt
tgcgtgttccatcccgactaccaggagttgtacagtggaggaaatgaccgcaatgtccta
atttgggaacccgaattagacggttcatatgacaattatctgaaggaacgtagttctaag
aagcagactcagagtaggagttttgtgtctagaatagcagccactgcagactcctggagc
agtgatgaagaaacttga
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