Magallana gigas (Pacific oyster): 105347411
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Entry
105347411 CDS
T03920
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105347411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105347411
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105347411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
105347411
NCBI-ProteinID:
XP_011454783
LinkDB
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Position
7:39040163..39052473
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AA seq
731 aa
AA seq
DB search
MSRHRNVRTMNYEDEYFDEDEVYGHSYDDSYCVSPATAAQFTFNRERDVNLSSYMEEGIP
EEEDESDPEPLSESGRDNLKLNDVEQAKLNSCKEEIVNVIGDTIPEHIVSQAVVKHQYNI
QAALNELLNQSEAPKPQRQPRPDRRANRQEFAPVQPTVQLKTPVKKNTTSDLAQATSATS
QIKLETSNQTVKSANNSETVFGTEKNTVKDLRTKAGNLNANNEVDVTDSAVLNDSKLQAV
NSEIDLVGDLVGRDLDTPSKSSSSSVPATPKSTSKVKQDKAKLKEEYERRKTGKDLLNLV
VIGHVDAGKSTLMGHLLYQMGVVNKRAMHKYEQESKKRGKGSFAFAWVLDETEEERTRGV
TMDIAQTAFETPHKQITLLDAPGHKDFIPNMITGAAQADVAILVVNATRGEFETGFESGG
QTREHALLARSLGVSQLLVAVNKMDTVDWSQSRYDDIVKKLGLFLKQAGYKDIDLSYIPC
SGLGGENLTKAVSEPKLASWYKGSTLVEQIDKFKAVERPMDKPFRLIISDVFKGLGSGFS
VVGRVSSGSVQAGDRVLVQPAGDLAVVKAVTMDDSDNTCGFAGDHVTVVLTGMDMAHVNV
GSVLCDPQNPIKSAMRIRARIVIFNLELPITRGFTVVFHYQSITEPAIIKRLNCQLNKNT
GEVIKNKPKCLVKNSSAVVEIEFERPVCLEMYKDYKDLGRFMLRQGGHTIAAGLVEEVLK
TKSKTEENSTE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggcaccgtaacgtacggacaatgaactatgaggatgaatattttgatgaagat
gaagtctatggacattcctatgatgatagctactgtgtctcaccagccacagctgcacaa
ttcacatttaatcgagaaagagatgtcaacttgtcgtcctacatggaggagggtattccc
gaggaggaggatgaaagtgacccagagcccctcagtgaatctgggagggacaacctcaaa
cttaatgatgttgaacaagctaaactgaattcctgtaaagaggaaatagtgaatgtgata
ggcgacaccattccagagcacatcgtgtctcaggctgtggtcaaacaccaatacaacatt
caagctgcattgaatgaacttctgaatcaaagtgaggcgcctaagccacaaagacaacca
aggcctgataggcgagcaaacagacaagagtttgcacctgttcagcccactgttcaatta
aaaactccagtcaagaaaaatacaacctcggacttagcccaagctacctctgccacctca
caaataaaactggaaacctcaaatcagactgttaaatctgcaaataactcagaaactgtg
ttcggtactgagaagaatactgtgaaagacttgcgcacaaaggcagggaatctaaatgca
aacaatgaagtggatgtcacagacagtgcagtgttaaatgattccaaacttcaggcagtg
aattctgaaatagacctagtcggagaccttgttggtagggacttagacactccaagtaaa
tcatctagcagcagtgttccagcaactcccaaaagtacttcaaaagtaaaacaagacaaa
gccaaactaaaggaagaatatgaaagaagaaaaacaggcaaagatcttctgaacttggtt
gtcattggtcatgtggatgctggtaagagtacattgatggggcacctgttgtatcagatg
ggtgtggtcaacaagagagccatgcacaaatacgaacaggagtcaaagaaaagggggaaa
ggatcctttgcttttgcatgggtcttggatgagacagaagaagaaaggacaaggggggta
actatggacattgctcagacagcatttgaaacacctcataaacagataacactgttagat
gcacctggacataaggactttattccaaatatgatcacaggtgctgcccaggctgatgtt
gctattctggtggtcaatgccacgaggggggagtttgagacagggttcgagtcaggtgga
cagaccagagaacacgctctgttggcgcgatcattaggtgtgtcccagttgttggtagca
gtcaacaagatggatactgtggattggtcacagagccgttatgatgacatagtgaaaaaa
ttaggactctttttaaaacaggcagggtataaggacattgatttgtcctacattccctgc
agtggactagggggagagaacctgacaaaagcagtctcggagccaaagcttgcctcatgg
tataaaggaagcacactggtggaacaaatagacaagttcaaggctgttgaacgccccatg
gacaaacctttccgtctgattatcagtgatgtgtttaaggggctgggaagtggattcagt
gtggtggggcgggttagctcaggctccgtgcaggctggtgacagagtcctggtacaaccc
gctggagacctagctgttgttaaagctgtaacaatggatgattcagataacacttgcgga
tttgctggggatcacgtaactgttgttttaacaggcatggacatggctcatgtaaatgtt
ggtagtgttctatgtgatccacagaatcctatcaagtctgccatgaggattcgtgcaaga
attgtcatttttaacttagaattgcccatcactagaggatttaccgtcgtgtttcattat
caatctataacagagcctgccattattaaacgcctgaactgtcaactcaataagaataca
ggagaagtcataaaaaataaacccaaatgcctggtgaagaacagcagtgcagttgtggag
atcgagtttgagcggccagtctgtctagagatgtacaaagattacaaagatctgggcagg
tttatgctgcgacaaggaggccatacaatagctgctgggctggtagaggaggttcttaaa
acaaagtcaaaaacagaagaaaactcaacagaatga
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