Magallana gigas (Pacific oyster): 105347554
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Entry
105347554 CDS
T03920
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105347554
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105347554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
105347554
NCBI-ProteinID:
XP_034323041
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All DBs
Position
6:complement(52902966..53028026)
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AA seq
1783 aa
AA seq
DB search
MEDLKRRLEFNNVAVQRQALNKLNEEVRKSLTTENKLTVSSPKSVACKLLEEKCGVADTV
VAKAACGVMVELVREGLAEFTAVQELFLNQVPTAKNLCGIVQGTTELLLWQAAVMAGTKD
GYMNPYTLRSPPHPFITILTNRPDSWTLLGNQVTKICSMKDERIQGISVEILEPFLKFVF
VEPLESPQYQPMKVCLQRELLALASQSDSIMLRKITGFLANILPCLQVKDVNSLGSTAML
VLAVVDVCLVRVQETEKILRKLLTFLLDLCWEFQAQLLDISMVTKYLLRAAEKIPSALQS
GENLISLGALLLRTEGEETVHLLATVMKILDSVPENLCGLEVDSLVLPILQILSLPSADA
DTGSPNPAVSLSAKILKIIEKKLEKPGLMKAQDYPPQSHLSWLSYRNNNYSLLARALGED
EQLATQWLENLINSLPRLKIVPVQITMIASALFITSPGQPWSDQSLRALQSISKADPQQA
NYFLPLYIYQLNKRLKPEVKLSIMKAIPSIAQHKFCIPPVLRTIQTFGSTPRLKALSIHL
LADLWKIQDRCFPYLLQAISEPAPAVLTKEGVDEVKLAKVKAIRDVCLIRGEQHGSDVLS
PLSDLLESSTSEVDSPVASLALEGLYHLCKAEVIDIVSTWSVVGSKLANDPRSIVQERIC
QLFSLLPELEVKTEEFEKLHQYAVASLWLLVHSDHHAVSMAAFRALSQFPTSSFKLSHIP
DKIKMDIVRQAEAIIGRGDNPDLTVEDVVTEVPGVCFIRLLGIIPPQVYEGYRDFLVEQV
GSEVKNLPRGVYHRSARRSGTAPSQSKTMETLPLFLQQQYDKCKQPGLRPGLAAGLLFSY
DPPVEVGRDGRPRKHYIITHSQNFHHMFNTLLHEVIIQPSDWQKMQQLPQAWVSFMDRLF
TSAVEGRRAEIDLQLKKNLIGIEDAEEKQKVAWLWVRDQLTDKIKKASKESPNVQGNAIL
SLSGLVLASQRYWTNLDKESQGQIDNVKDFQSQSHWATVVMDTLMSLMDVTFQPEGHILG
LCQQRTKDDRMTSSFLAQASAVLALSQMTPVIINLDVNRIFGILEILIKWLPGQPEAPEA
PVLQTAYGLGLGGLLERLFEEHFLETCGSRETVQVWRALDNLEEACFTGREESCGCLLGL
GLAVSSLCTDSKTEARAHVLSVLDKLQSCWQSSQPLDQAHEKMAVDLALISSVAFNSNII
SSDRVLSTVSQVVASQTEAPKSSGIAVAAGLLLYHLSKAGLSTVTEQQALLHQTWTRKLN
SQESSDQEKIAAMSGLLALVGSHRPLTPTSGTMSLSLSAINVDEVVKVIRQVVSMGDDLG
LQNSAAWMLGQYHMSASSVTESRASVATSMSYLPESSFLRAVVDFLLDAGRKGPEAVPAP
QVECCLRSLQVTQSLPPVNWAGILTPLMRTNFSEEVKRLCLQVGITQSSSSTTAAVLVSS
WVVPPLIHSLSAPCRCLLYDELPTLIASLSPTTLKSLLDTFQSETGSSYLHGIYGLQKAL
KVPDPPPAVASVLLDCLREVYKTQRSLCRIDDKLFHLLAECLGSVTDEVFDDLTDNDFVE
DNYFLSCFVRCYLLTQGRQPIALLNRCVDASLNNPGSDTPELHALFYHTFWHISQSSAKS
HGVLNQLQWLLELLGHTRNLATGAITLSDKVKDKKKVVEFAIKLAAAAISIWTSSSSGLV
YNVNPNYLMNTCPSFPEGHDLTLSRCPGRPLDFFPSYVSGLEGEPWSQISPKVMDWLAVM
HRKHPELSPPLSAAEIGLKHTSDFRRAATWTDILQRYEAVALA
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
atggaagatttaaagagaaggttggagttcaacaatgtggctgttcagcgacaagcacta
aacaaactgaatgaggaagttagaaagagcttaaccacagagaataagttaactgtctca
tcacctaagagtgtggcatgcaaacttttggaggagaaatgtggtgtcgcagacacagtg
gttgccaaggcagcatgcggtgtaatggtggagctggtgagagagggactggccgaattc
acggctgtccaggagttgttcctcaatcaagtaccaactgcaaagaacttatgtggcatt
gtacagggtaccacagagttgctcctgtggcaagcggcagtgatggctggcactaaggat
gggtacatgaacccctacaccctgaggtctccccctcaccccttcatcactattttgacc
aatcgacctgattcctggacactgctaggcaaccaagtgaccaaaatctgcagtatgaaa
gatgaaaggatccaaggaatatcggtagagatccttgagccattcttgaagtttgttttt
gtggaaccactagagagtcctcagtatcagccaatgaaagtctgcctacaaagggagcta
cttgccctagccagccaatcagacagtatcatgttaaggaaaataacaggatttttggcc
aatattttgccttgtcttcaggtaaaagatgtgaactctctaggaagcacggccatgtta
gtactggcagttgtagacgtgtgtttggttcgagttcaagaaacagagaaaattctcagg
aaacttctgactttcttgctggacctttgctgggaatttcaggctcaattattagatata
tccatggtaaccaaataccttttaagggctgcagaaaaaatcccatctgcccttcagtca
ggggagaacctgatttccctgggagctctgctactcagaactgagggggaggagaccgtc
catctactagccactgtcatgaaaattctggacagcgtccctgagaatctgtgtggtttg
gaggtagactcccttgtgttgccgattctccagattctgtccctgccttctgcagatgct
gacactggcagtccgaatcctgctgtctctttatcagcaaagatcctgaagataatcgag
aaaaaactagaaaaaccaggtcttatgaaggcacaggattaccctccacaaagtcacctt
tcctggttgtcatacagaaataataactactccctcctggcccgggctcttggagaggat
gagcagctggctacccagtggttagagaacttgatcaactccctacccaggcttaagatt
gttccagttcaaataacaatgattgcatcagcactatttataacatcaccaggacaacct
tggtcagaccaatcactgagggcattacagagcatctccaaagctgatcctcaacaggca
aactactttttgcccctgtatatctatcagctgaacaagcgcctcaaacctgaggtcaaa
ctgagcatcatgaaggctattccaagcatagcacagcataagttctgtatccctcctgtc
ctgagaaccatacaaacgtttggatccacccctcgattaaaggcgttgtccatacacttg
ttggctgacctctggaagatccaggaccgatgtttcccgtacttacttcaggcgatctct
gaaccagccccggcggtcttgaccaaggagggtgtggatgaagtgaagctagccaaggtc
aaggccatcagagacgtctgtctgatcaggggagagcagcatggcagtgatgtgttatct
cccttgtcagacttgctggagagttccacatccgaagtggattcaccagttgcctccctt
gcattggagggattgtaccatttgtgtaaagcagaagtgatagacattgtttccacctgg
tctgtagtgggatccaaacttgccaatgatcccagatcaatagtgcaagaaagaatttgt
cagctgttttctttactaccagaattggaagtgaaaaccgaggaatttgagaagttacat
cagtatgcggtggcatccctgtggttgttggttcacagtgatcaccatgcagtcagtatg
gcagctttcagggccctgtctcaattccccacctccagcttcaagttgtctcacatccca
gacaagattaaaatggacattgtgaggcaagctgaagcaatcattgggaggggagataac
cctgacctgactgttgaggatgttgtaacagaggttccgggggtatgcttcatccgttta
ctgggaattattccaccccaggtgtatgaaggatatagggactttcttgtggaacaagtg
gggtcagaggtcaagaacttgccgcggggagtgtaccacaggtccgcacgacggtcgggg
acagcacccagtcagagtaagaccatggagacgttgccattgttcctacagcagcagtac
gacaaatgtaaacagcctggtctcagacctggcttagcagcgggtctcttgttcagctat
gacccccctgtagaggtagggcgagacggtcggccacggaaacactacatcatcacgcac
agccaaaacttccaccacatgttcaacactctgctacacgaggtgataatccaaccctct
gattggcaaaagatgcagcagttgccccaagcctgggtttctttcatggatagacttttt
acctcagctgtagaaggacgaagagcagaaattgatctgcagttgaagaaaaacctcatt
ggaatagaggatgcagaagaaaaacagaaagtagcatggctgtgggtgagagaccagctg
actgacaagattaagaaggcatcaaaagagagtccaaatgttcagggaaatgccattcta
tccttgagtgggctggtactggcctcacaaagatactggactaaccttgacaaagaatct
caaggtcagatagataatgtcaaggacttccagagccagtcacactgggcaactgttgtc
atggatactctgatgtcactgatggatgtaacctttcaacctgagggacacatcctggga
ctgtgccaacagaggacaaaggatgatagaatgacctctagtttcctggcccaagcttct
gctgtcttggcactttcccaaatgacacctgttataatcaatctggatgtgaacaggatt
tttggaattttggaaattttgataaaatggttaccaggacaaccagaggctccagaagca
cctgtcctgcagactgcctatggtcttgggctgggtggacttctggaaagactgtttgag
gaacatttcctggaaacatgtggatcaagggagacggtacaggtttggagagctctggac
aatttggaggaggcatgttttactggaagagaagaaagctgtgggtgtcttttgggcctg
ggtcttgctgtatcatccctgtgtactgattccaagacggaagctcgagcccacgttctc
tcggttcttgacaagctgcagtcttgttggcagtcatctcaaccattggatcaagctcac
gagaagatggctgtagacttggctctgatttctagcgttgccttcaacagcaacattata
tcatctgacagagtgttgtccaccgtgagccaagtagtcgcaagtcaaacagaggcacct
aagagttctgggattgctgtagcagcaggcctactgttataccacctctctaaggcagga
ctatccactgttacagaacaacaggcactgctgcaccaaacctggaccaggaaactgaac
tcacaggagagttcagaccaagaaaagatagcggctatgagtggactgctggccttggtt
ggttcacacagacctctcacccctacctcagggacgatgtccttatccttgagtgctata
aatgttgatgaggttgtcaaggtcatacgacaggttgtatctatgggagatgaccttggt
ctccagaattcggcagcctggatgctgggtcaatatcacatgtcagcgtccagtgtaact
gagagcagggccagtgtggcaacctctatgagttatctccctgaatccagcttccttaga
gctgtagtggattttctccttgatgcgggaaggaaaggtcctgaagcagtgccggcccct
caagtagagtgttgcctcagaagtctacaggtgacacaaagcctgcccccggtcaactgg
gccgggatcctcaccccactgatgaggaccaacttcagtgaagaagtgaagaggttgtgc
cttcaggttgggattacccagagttcatcatccacaacagcagcggtattagtcagttcg
tgggtggtcccacctctcatacactctctcagtgcaccttgccgttgcttactctatgat
gagttacccacgctcatcgcctccctgtcaccaacaactttgaaatctcttctggataca
tttcaaagtgagactgggagctcgtatctgcatggaatatatggactacagaaggcattg
aaggtacctgaccccccgccagctgtggcgtctgtattactggactgtttgagggaggtg
tataagacacagagatcattatgtcggatagatgacaaattgttccacctgcttgcagag
tgtcttgggagtgtaacagatgaagtgttcgacgacctcacggacaacgattttgtagag
gataattactttttgtcctgttttgtgagatgctatttgttaacacaaggaagacaacca
atagcattgcttaatcgctgtgttgatgcgagtcttaacaatcctgggagtgacacaccg
gaactccatgctctgttttaccacacattctggcacatctcccagtcttcagccaagtca
catggagttctgaatcagctacagtggttgctggagttactgggccacacccgtaactta
gcaactggtgccatcactctgtcagacaaggtcaaggacaaaaagaaggttgtggagttt
gcaatcaaattggcagctgcagccatcagtatatggacctcgtcctcatctggtcttgtg
tacaatgttaaccctaactaccttatgaatacctgtccttctttccctgagggtcatgac
ctgactttgagcaggtgccctgggcgtccactagatttcttcccatcctacgtttctggg
ttagaaggagagccatggagtcaaatttcacccaaggtaatggactggctggctgtgatg
cacagaaaacatccagaattatccccacctctctcagctgctgagattggtttgaagcac
acctcggacttcagacgagcggcaacatggacagatattctacagaggtacgaggcagtc
gccttggcctga
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integrated database retrieval system
