Magallana gigas (Pacific oyster): 105348485
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Entry
105348485 CDS
T03920
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105348485
09123 Folding, sorting and degradation
03018 RNA degradation
105348485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105348485
03041 Spliceosome [BR:
crg03041
]
105348485
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105348485
mRNA degradation factors
5'-3' decay
Lsm complex
105348485
Spliceosome [BR:
crg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105348485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
105348485
NCBI-ProteinID:
XP_011456230
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All DBs
Position
7:complement(41810525..41818768)
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AA seq
133 aa
AA seq
DB search
MLPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVIQKSKGRGEMRGRGGPQRGGRGGRGAFGSRGGGRGGG
RGGQQRPGKGRGD
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgttgccattatcattattaaggacagctgtcaatcatcctatgcttgttgagttaaag
aatggagagacatataacggtcatttagtcagctgtgataactggatgaacatcaatttg
agggaagtcatttgtacatctagggatggtgaccggttttggagaatgcccgaatgttac
atcagagggagcaccatcaaatatctcagaatacccgatgaggtgatagacatggttaag
gaggaggtcatccagaagtcaaagggcaggggagagatgaggggtcgagggggcccccaa
aggggcggtcgtggaggaagaggtgcattcggaagcaggggtgggggacgaggaggtggg
cgtggggggcagcagaggcccggcaagggtaggggagactga
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