Magallana gigas (Pacific oyster): 109617603
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Entry
109617603 CDS
T03920
Name
(RefSeq) uncharacterized protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109617603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
109617603
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109617603
Spliceosome [BR:
crg03041
]
Complex C
Other components
Step II factors
109617603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
DEAD
IBR
IBR_1
KH_DEAH11_2nd
OB_NTP_bind
IBR_2
AAA_19
AAA_22
zf-RING_2
RRM_DEAH11
RsgA_GTPase
Helicase_RecD
AAA_30
HA2_N
AAA_25
Motif
Other DBs
NCBI-GeneID:
109617603
NCBI-ProteinID:
XP_034338152
LinkDB
All DBs
Position
3:complement(12033719..12045482)
Genome browser
AA seq
2081 aa
AA seq
DB search
MAQMTKIVTLILKPEGEKKITINDSKEQMDTKRNRSSVPEMHECISSEMKTQLLSDKEQC
FNTMDVMHEAVTEKQGKSCLGFPEDDLNNISEDVKIKLSQIRTNREFSCTNKCDLKREKT
ILPQGNGFVNFEIPDMVCEKVKTAKYTVLKKHTKDISIQIENSHDEDVKEMVKSRQEINH
PDKKTFKANNYAPKSSQTGNALSGSNTVSHSKAKRSFESKTTDVKNDGDYTANKSIQNQV
VNVKSNVTELDKITKREMEVLDRMKSKLTKPAKETREQDNFIVKYEPTRNQEREKLKEKI
NLNRDSREFAEEKHNVPANCNSHKKEISKGNSKYISNATTKSALNPEYINYSITEDEKNI
CNGSKKKRNPKREKTESKSNEREGQVLSTKNKRDKKISREKQTVKQPTEKMPQFKNVERH
TEDRLNSLTYTMTVWPQLKEIDLLSHLVGIIVDIRFRIKSMESDSVGNATKVVIIFKSNA
DAQKFQSCLRESDRGLPFRCQFESDALSTTKYKSITKTYQCIEDRAVKLLEMHGDKQKNT
EVKLSALGNFSQKRFIDLTVHEEREAQRKALNDKLDELKQQKIEFQLCQSEVDKQVKSYK
EGNIESKDIDSVMKRFEVECSRLEQALPIYAKRTEIVDKILQSQVSIVLGETGSGKSTQI
TQYILDSALGSSGKIVCTQPRKVAAMSLAQRVASELNSNVGDLVGYQVGMKSKLSEHTKI
LYMTDHMLLNECLKDPLLINYSCVVIDEAHERSVYTDLLLGMIKKCLPQRPEFHVVVTSA
TIDPEIFVHYFGGPEMCPVLKVSGRMFPVEIEWMKTSYGSEIADEYEIKAIEKAAEIHGR
EPPGDILVFLTSQLEIEQCAKKLEILLRGMKDYWILPLHGKLQTDEQKLVFKDSPIGRRK
IVLATNVAETSVTIPGIKYVVDTGAVKELSYDPRKKVSALRVVKITKSSADQRKGRAGRT
SPGKCYRIYSKQDYDAMLSTSIPEIQKIHLGHAILKLLQLDVDPLEFDFVQAPERISMEN
AFEHLSKLGAIEDGKISQLGKWIAKLPFEPALGVLVHDSVNCNVGLEGIIVAASCTVSGC
LFYRGGTQKQKETSDKLKVPFCHKLGDHFTNLCVYKEWHAVQEKQKGKWCKNNSVNGKAM
RSIHDCAGEILYVLRKDLNLSIKFEFTTSSNFERILQRLLFRSFQNNLCRYLGHEKAGYY
FIDKNQQVIMHPSSAFQSLASFPEWVIVERVMQTSRDFALNITAVADEDVEEALIEGSLD
FDIEDVESRRVAHVLTEYVGVHGHREFVGPRYSKVKAMQENLSVQCKDSVFVIDADRDKG
KISIFAPVSSTEISTYTLKTAIDPIKERLKTETFEIPVLPDFHNIRISIGAGGQTKELLY
QDEYSNVFIFGDADAFGSNNEMIKWFERFGRIQSFIKKSPNNTNPRYLGQIIYENAENAL
AAVNATKRNQYVSAKPPKGMGRSEEADLLKARLTWCRRKCSGIGFVEIHNQHKMDEIIRS
STFSKLSVGGKRVKITRSRNKRNPDKKNEVFVSGLGELVNEDVLRESFFNHFNISVNDIG
KVVVIREKIKTTPQMMFSYKTRLESGFKRYLKQNMFCVSLIEPKQADFTYQAFVTFKDPE
QGFDACSRLKDNFFIGDNAVSVTPEIQTRLFVLAPIYTRVQKEIVKYCEKVKKEKGGRRL
TITHLKNENFVINIDADSIESMVHTRNKIQKMLEGETVDIEQIPTLRYIFTRDGQAKLEK
IMNKTDTLILLDHRNTSLTVHGKTFARDMALRKIHKYLEKLSSSKSRVYDLKGDSKPPGL
MKAVIMMHDVDLQGLKDLSDLSTVELDHRNHRIRMLGSDKAVDKAVAEIDELMNRLRKQC
SIPNSNQPECGICLCEISETEIHRLESCGHPYCRDCIKMNIESTIQSKDFPLKCYQDGCE
MLWAWKDFVNMTKQRFCSLQNIIDSSLSCFIRENKDKARYCITPDCPMVYKVSANGGRIV
CGVCRVGMCSKCHVEYHNGMSCEIYQIENGNDESGLREWMRRDPNNRKLCPNCYAGIEKD
GGCQHMECRDCKMHICWTCMKFFNSGQECYGHMAKVHGSFM
NT seq
6246 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaatgaccaaaatcgtcaccctaattttgaaaccagaaggagagaaaaaaatt
acaataaatgactcgaaggagcagatggacacaaaaaggaatcgcagttctgtaccagag
atgcatgaatgcatttcatctgaaatgaaaacacagctattaagtgataaagagcaatgt
ttcaatacaatggatgtgatgcatgaagccgttacagaaaagcaaggcaaatcatgtttg
gggtttccagaggatgatctaaacaatatttcagaagatgtcaagatcaagctctctcaa
ataagaacaaacagagaattttcttgtacaaataaatgtgacttaaaaagagagaaaaca
attttgcctcaaggaaatggttttgtaaatttcgaaattccagatatggtgtgtgagaaa
gttaaaacagcaaaatacactgtattgaaaaaacatacaaaagatatttccatacaaatt
gaaaattcacatgacgaagatgttaaggaaatggtaaaatctaggcaagaaataaaccat
cccgataaaaagacattcaaagcaaataattatgctcctaaatcaagtcagacaggaaac
gcactttctggttcaaacacagtttctcattctaaagcaaaacgaagttttgagtcaaaa
accacagacgttaaaaatgacggagactatactgcgaacaaatcaattcagaatcaagta
gtcaatgtcaaatcaaatgtcacagagttggataaaattacaaaacgagaaatggaagtt
ttagatagaatgaaatcaaagttgaccaaacctgcaaaagaaaccagagaacaagacaac
ttcattgtgaaatatgaaccaacacgcaatcaagaaagagaaaaattaaaggaaaaaata
aatttgaaccgagatagtagagaatttgccgaggaaaagcacaatgttccagcaaattgt
aattcgcacaaaaaggaaatatcaaaagggaactcaaaatatatatctaatgcaaccact
aaaagtgcattaaatcccgaatatatcaattattcgattactgaagatgagaagaatata
tgcaacggaagtaagaagaagagaaatccaaaaagagaaaaaacagaatctaaatctaat
gaaagggaagggcaggtactatctacaaaaaataaaagagataaaaaaataagcagagag
aaacaaacggttaagcagccaacagaaaaaatgccacagtttaaaaatgttgaaagacac
acggaagacaggttgaactctttgacatatacgatgaccgtttggccgcagctgaaagaa
atcgatttgctctctcatcttgttggaattattgttgacataagatttcgaataaagtcc
atggaaagtgattctgtaggtaatgcaacgaaggtcgtaattatctttaaaagtaacgca
gatgcccaaaaatttcaaagttgtctgagagaaagtgatcgaggattgccttttcgatgc
caatttgaaagcgatgctttgtctacgacaaaatataaaagcattacaaaaacctaccaa
tgtatagaagacagagctgtaaaacttttagaaatgcatggagataaacagaaaaatacc
gaggtcaaactatctgcattaggcaatttttctcaaaaaagatttattgatctaacagtt
cacgaggaacgagaggcacagagaaaggctttaaatgacaaactggacgaactgaaacaa
caaaagatcgaattccagctttgccagtccgaagtagataaacaagttaaatcttataaa
gaagggaatatagagtctaaggatattgattctgtgatgaaaaggtttgaagtcgagtgc
tcaagattggaacaggcattgccaatttatgcaaaaagaacagaaattgtcgataaaatt
cttcagagtcaggtttcaatagtattaggtgagactggatctggaaaaagtacacaaatt
actcaatatatccttgattccgcattaggctcctcagggaaaattgtttgtacacaacca
cgaaaggttgcggcaatgagtcttgctcaacgagtggcatcagaattgaattcaaacgta
ggcgatcttgttggatatcaagtaggaatgaagtcaaagctgagtgaacatactaagata
ttgtacatgactgatcatatgctcttaaatgagtgtttaaaagatccattgttgattaac
tactcgtgtgtagtgatagatgaggcacatgaaagaagcgtgtatacagatcttttgctt
ggaatgatcaagaaatgtttgccgcagcgaccggaatttcatgttgttgttacgtctgca
accattgatcccgaaatttttgtgcattattttggaggaccagaaatgtgtcctgtcctg
aaggtttcagggcgtatgtttcctgttgagattgagtggatgaagacttcatatggttca
gagatagctgatgaatacgaaataaaagctattgaaaaagcggcggagattcacggtcga
gagccgcctggtgatattttagtttttctaacttcacaactagaaattgaacaatgtgct
aaaaaactcgagattttgctcagaggaatgaaagattactggatattacctttacatgga
aaacttcaaacagacgaacagaaattggtctttaaagattctccaattggaagacgaaaa
attgttttggctactaatgtcgccgagacttccgtgacaattccaggaataaaatatgtt
gtcgatactggagctgtgaaagaactctcatatgacccaaggaagaaagttagtgcgttg
cgagtcgttaagatcacgaaaagctctgctgaccaaagaaagggaagggcaggaagaaca
agtccaggaaaatgttatagaatatattctaagcaagattatgatgcaatgttatccacg
tctatccctgaaatacaaaaaatacacttaggtcatgcaatcctgaagttgctgcaacta
gatgttgaccctcttgaatttgacttcgtacaagcgccggaaagaatatcaatggaaaat
gcttttgaacaccttagtaagcttggtgcaattgaagacggaaaaatttctcaattagga
aaatggattgcgaagcttccatttgaaccagctttaggtgttcttgttcacgattctgtt
aactgcaatgttgggttagaaggtattattgttgcagcgtcatgcacagtttctggatgt
ctattttatcgaggtggtacacaaaagcaaaaagaaacatcggataaacttaaggttcct
ttttgtcataaactaggcgaccatttcaccaatctttgcgtttataaggaatggcacgca
gttcaagaaaaacaaaaaggaaagtggtgtaaaaataattcagttaatgggaaagcaatg
cgtagcattcatgattgtgcaggtgagatcctttatgttttaagaaaggacctaaactta
agtatcaaatttgagttcactacttcttccaatttcgagaggattttgcagaggctatta
ttcagatcatttcaaaacaacttgtgtcgttatcttggtcatgagaaagccggatattat
ttcatagacaaaaatcagcaagttattatgcacccttcatctgcattccagtcactagca
tcttttccggaatgggtaattgtcgaaagggttatgcaaacatcgcgtgattttgcctta
aacattacagctgtggcagatgaagatgtcgaggaagcgctaattgaaggttccttagat
tttgatatcgaagacgtagaaagtagaagagttgcacatgttttaacagaatatgttggt
gttcatggtcacagagaatttgtaggtcctcggtatagcaaagtcaaagctatgcaagaa
aatctttccgtgcagtgtaaagattcagtttttgtgattgatgcagatcgtgacaaggga
aaaatatctatttttgcacctgtaagctctacagaaatttcaacttatacattaaaaacg
gccatagacccaatcaaggaaagacttaagactgaaacttttgaaatccctgtgttgcca
gattttcacaacatacgaatttcaattggtgctgggggacaaactaaggaactactttat
caagatgaatacagtaatgtgtttatttttggtgatgctgatgcctttggttcgaataat
gaaatgattaaatggtttgaacggtttggtcgaattcagtcatttatcaaaaaatcaccg
aataacacaaatccacgttacctgggtcaaatcatttatgaaaatgcagaaaacgcccta
gcagcagtaaatgcgactaaaagaaatcagtatgttagtgcaaagccccccaaaggaatg
ggaaggtctgaagaagctgatttactaaaagctaggcttacttggtgtagacgcaaatgc
tctggcattggatttgttgaaattcataaccaacacaaaatggatgaaatcatcagatca
agtacttttagcaaactttctgttggtggaaaacgagtaaaaataacacgaagtaggaac
aaaagaaatccagataagaaaaacgaggtatttgtatcaggtttaggggaactcgttaat
gaggatgttttgcgtgaaagtttcttcaaccacttcaacatttcagtaaatgatatagga
aaagtcgttgtcattcgagaaaaaattaaaacgacgccacaaatgatgttttcgtacaaa
actagacttgaatctggttttaaaaggtacctgaagcaaaacatgttttgtgtgtcttta
attgaaccaaaacaagctgattttacctaccaagcatttgtcacgtttaaagaccccgaa
caaggttttgatgcatgttccaggttaaaagataacttttttattggagataatgctgtg
tcagttactcctgaaatccaaaccaggctctttgtattggcgccaatttacacacgagta
cagaaagaaattgtaaaatactgtgagaaagttaagaaggaaaaaggaggaaggcggcta
acaataacgcatctgaaaaatgaaaacttcgttatcaatattgacgcagacagcattgaa
agtatggttcacacaagaaacaaaatacagaaaatgctcgaaggtgaaacagttgacata
gaacagattccaaccctccgctatattttcactcgagacggacaggcaaaattagagaaa
ataatgaacaaaaccgatacactgattttgcttgatcacagaaatacatctttgaccgtt
catggcaaaacttttgcaagagatatggctttaagaaagatacataagtacttagaaaaa
ctgtcttcttcaaaatcgcgggtgtatgacctaaaaggggattcaaagccacctgggttg
atgaaagctgtgataatgatgcatgatgtagatcttcaaggtctaaaagacttatcagat
ttatcgactgtagaattagatcacagaaatcatagaattagaatgctagggtctgataaa
gcagtggacaaagcagttgctgaaatcgatgaattaatgaatcgtcttcggaaacaatgt
tctataccaaactcaaatcagcccgaatgtggaatatgtctttgtgaaatctccgaaact
gagattcataggttagaatcttgtgggcatccttattgcagggattgcataaagatgaat
atagaatcaacaatacaaagcaaagactttccacttaaatgctaccaagatgggtgcgag
atgctttgggcatggaaagattttgtcaatatgacaaaacaaagattctgcagccttcag
aacataatagattcatcgttatcttgttttattagagaaaataaagacaaagcgcgatat
tgcataactccagattgtcctatggtctacaaggtcagtgcaaatggaggaagaattgtt
tgcggagtttgtagggttggtatgtgtagcaaatgtcatgtcgaataccataacgggatg
tcatgtgaaatataccaaatagaaaatggaaatgatgaatctggtctgcgggaatggatg
cggcgagatccaaataacagaaaactctgtccaaattgttatgcaggaatcgagaaggat
ggtggttgtcagcacatggaatgtcgagattgcaagatgcacatttgttggacatgcatg
aaatttttcaactctgggcaagaatgttatggtcatatggcgaaagtacatgggagtttt
atgtaa
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integrated database retrieval system
