Magallana gigas (Pacific oyster): 109617800
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Entry
109617800 CDS
T03920
Name
(RefSeq) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109617800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
109617800
03400 DNA repair and recombination proteins [BR:
crg03400
]
109617800
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109617800
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
109617800
DNA repair and recombination proteins [BR:
crg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
109617800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109617800
NCBI-ProteinID:
XP_034320803
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All DBs
Position
8:15453818..15456170
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AA seq
459 aa
AA seq
DB search
MAALSLESIVLEILPDFGVSVLKPEQKEIIKHAAEKKDCIAVLPTGFGKSLPFQLYAAAQ
KRMNQGPGSVHVLVCSPLIALMKDQTKKMSRISHLNVGYKGESVHMDEKIKQGDIDLIYA
SPETLVGEPEWRTAFQGLNVTLIVVDEFHTIYTWGLQSDKGKEAFRGWFAQLGELRSFYP
DAPLLALSATCSLKIRKKTLTLLNLKDPAEITLSPNKSNIKLVVKKVHNSVEMALLWLVD
GLESLKEEFPKSLVYCNSIKDASIIYQYILSECPNLISCVAMFHSESAEKTKDKIISDLG
NPQSDLRIIIATSALGMGVDIQGFHSLVLYGPPLTAVDLIQGIGRIGRDGNPSCAVLLHN
SYNVRNIDTDVKCVIRDPSCRRVSIMKSFLKDSELQGIHSDMEKHTCCDICEDECKCGDC
SQLQLERLLKSSSIETDENVSDSESEVTDFESSGDFDEL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctcagtttggaaagtattgttttggaaatcttaccagattttggcgtaagt
gtacttaaacctgaacagaaagagataataaaacacgcagcagaaaagaaggattgtata
gctgtcctgccaacaggatttggaaagtctttgccttttcaactatacgcagccgctcag
aagcgaatgaaccaggggcccggttcagtccacgttttagtgtgctctcctttgatagct
ttgatgaaggaccagaccaaaaaaatgtcccgcatcagccatttaaacgtgggctacaaa
ggtgaaagtgtacatatggatgaaaaaatcaaacaaggagacattgatttgatttatgca
tcaccagagacattggttggagaaccagaatggagaacagctttccaggggctaaatgtt
acccttatagtggtggatgaatttcacacaatatatacatggggtctacagtcagacaaa
ggaaaagaagcatttagaggctggtttgcccaattaggagaattacgttcattttatcca
gatgccccacttttggcccttagtgcaacatgctctttaaaaataagaaagaaaacatta
acacttttgaatctgaaggatcccgccgaaattacactatcaccaaataaatcaaacatt
aaacttgttgttaaaaaagtgcacaattcagtcgagatggcattattgtggcttgttgat
ggacttgagtcactaaaggaagaattcccaaagtctttagtgtattgcaattctataaag
gatgcttccattatttatcaatatattttatcagaatgtccaaatttgattagctgtgta
gcaatgtttcattcagagtctgcagaaaagaccaaagacaaaataatttctgatttggga
aatccacagagtgacttacggataattattgccacaagtgctcttggcatgggagtggat
attcaaggatttcattcacttgttctctatggacctccactaacagcagtagaccttatc
caaggtatcggtcgtattggtagagatggtaatccatcctgtgctgtattgctgcacaat
tcatacaacgtgcgtaacattgatactgatgtgaaatgtgttattcgtgatcccagttgc
agaagagtatccattatgaaatcttttctaaaggactcagaactgcagggaattcatagc
gacatggaaaaacacacctgttgtgacatatgtgaagatgaatgtaaatgtggtgattgt
tcacagttacaattggaaagacttttgaaaagtagttctattgaaactgatgaaaatgtg
tcagattctgaatctgaggtgacagattttgaaagttcaggtgattttgatgaattatga
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