Magallana gigas (Pacific oyster): 109617963
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Entry
109617963 CDS
T03920
Name
(RefSeq) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109617963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
109617963
03400 DNA repair and recombination proteins [BR:
crg03400
]
109617963
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109617963
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
109617963
DNA repair and recombination proteins [BR:
crg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
109617963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Colicin_immun
Motif
Other DBs
NCBI-GeneID:
109617963
NCBI-ProteinID:
XP_034301325
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All DBs
Position
5:44040510..44042764
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AA seq
529 aa
AA seq
DB search
MAASIDIDMGILKERFNIQDLKRIQREGITAILSGTDLFVGCKTGSGKSLIYECIPLLIP
DSSVLVIAPLQSIMKEQTERLQKLGFSAMCVGDEEFNDPRITKMECDFLFGSPEALLGDR
KWRERLQTPEYQRKIKLIVVDEAHTIVQWGIGSKDEEPFREWFSRIGELRSICPKVPIAA
LTATSSASQRRTILNKLCFSKHSEVIAESPDRENIKITSVQVPNNEDLHTTFGWLIDGLK
AEKESFPRHVIFSETILTVSKIYSAFVDMLGSDCKYVNMFHSKTKETLKEEIRKDMTQDG
FIRVLICTNSAGMGVNYSFLRNVVHYGLPHKMDTFVQQMGRAGRTGELSNELLLFKLHKG
MLKKVDTDLVQLAKDTQCRRKVLCNSYLCIKDDNNPLHNCCDVCEKECQCGGESCPATHP
ARMERKIYCPSMERTVSDQERVLLRDKLRALKFSLSISNTLLSSELMHGLTDDVIEDIVA
KSDKLFSPYDILATMPIWSYEFSEKICTILSDVFGDIEMYDFDDSNDSD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcgatagacatagacatgggaattttgaaagaacggtttaatattcaggat
ttaaaacgtattcagcgagagggaattacagcaatattaagtggaacagatttattcgta
ggttgtaaaactggaagcgggaaatctcttatatatgagtgcataccgctgttaatacca
gactctagtgtactcgtcattgcaccattgcaatctataatgaaggaacaaacagaaaga
ctacaaaagttaggattttcagctatgtgtgtcggagacgaagaatttaatgaccctaga
ataacgaaaatggaatgtgactttttatttgggagtccagaagcgctcttgggagataga
aaatggcgcgagaggttgcagacacccgagtaccagaggaaaattaaattgattgtggtg
gatgaagcacatacaattgtacagtgggggatcggcagtaaagatgaagaacccttccgg
gaatggttttccagaataggagaattacgatccatttgccctaaagtacccattgctgca
ttgactgcaacttcatcagcttctcaaaggaggacgattttgaacaaactatgtttcagt
aagcattctgaagtgattgcagaatctcctgacagagaaaacataaaaataacatctgtt
caagttcccaataatgaagatttacacacaacatttggttggctaattgatggactaaag
gcagagaaagaatccttcccaagacatgtgatattttctgagacaattcttacagtctct
aagatatactctgcttttgttgatatgctaggaagtgattgtaaatacgttaatatgttt
catagcaaaacaaaagaaactctgaaggaagaaatccgaaaagatatgacgcaggatggc
tttatccgagttcttatttgcacaaactctgcggggatgggggtcaactattccttttta
agaaatgtagttcattatggattgccacacaaaatggacacatttgtgcaacaaatgggt
agagcaggacgaactggtgaactatccaatgaacttttattattcaaactgcataaaggg
atgttaaaaaaagtggatactgatcttgttcagctggcaaaagatactcaatgccgacgc
aaagtactgtgcaattcctacctgtgcatcaaggatgacaacaaccctttacataactgt
tgtgacgtgtgtgaaaaggaatgccaatgtggtggtgaatcatgcccagcaacgcaccca
gcacgtatggaaaggaagatctattgtcctagtatggaacgtactgtatcagaccaagaa
cgtgttcttttaagagacaaattgagggcattaaagttttcgttatccatttccaacaca
ttgctctcatctgaactgatgcatggccttacagacgatgtgattgaagatattgtggca
aaatctgacaagcttttttctccctatgacattttggctactatgcccatttggtcatat
gaattttcagagaagatatgcactatattaagtgatgtgttcggagacattgagatgtat
gactttgatgacagtaatgattccgattga
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