Magallana gigas (Pacific oyster): 117680483 Help Entry 117680483         CDS       T03920                                  Name (RefSeq) superkiller complex protein 2   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism crg  Magallana gigas (Pacific oyster) Pathway crg03018   RNA degradation Brite KEGG Orthology (KO) [BR:crg00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     117680483  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:crg03019]     117680483 Enzymes [BR:crg01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      117680483 Messenger RNA biogenesis [BR:crg03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      117680483   mRNA degradation factors    3'-5' decay     Ski complex      117680483 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C MSS51_C Ntox28 DUF3516 Motif Other DBs NCBI-GeneID:  117680483 NCBI-ProteinID:  XP_065930512 LinkDB All DBs Position 2:1491445..1507056 Genome browser AA seq 1234 aa AA seqDB search MDLEGLGVDFDLAEVGCQGKFVPVPKRKNNEGFPRKTLPAGLPPILPSWGEELEDYLTCI EQVPVHDLNSAQRFWPREPHPENLYHAEVSGVQTTIQVDRNPTTGELLGYKEEYLESTSE GKTSLSLRRPPGPAGQDVRGSSANFPFLPGGMEEVETMLSEDKTEFLDFEKDLLSVAPGM MEGMTFNDLDIAPKQKEPTLLNLADLMSAADLDEFNLGDDEDEGESKNEDHDQGHILGEV KLEKSESLENLVKIDEDRETERGVRVGGEGRREEWAVKVDVDHPVADFHQRIPDMAYKWE FELDVFQKQAILHLENHESVFVAAHTSAGKTVVAEYAIALSMKHMTRTVYTSPIKALSNQ KYREFKQTFGEVGLITGDVQINQTASCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYI NDAERGVVWEEVLIMLPQHVHIILLSATVPNTLEFADWIGRTKKKKIFVISTLKRPVPLE HHLYTGTTGKTSNELFLIVDGKKNFLTSGYNKALEAKKEKSKSSQGFGPKGTRGGHPNKD KNIWISVIDMLKKKDKLPAVAFTFSKKKIDENAQNLLSKDLTTASEKSEIHIFFHSAIKK LKPPDQKLPQVLQMESLLKNGIGVHHSGILPILKEVVEMLFQRALVKILFSTETFAMGVN MPARTVVFDSIRKNDGTCFRDLLPGEYIQMAGRAGRRGLDTTGTVIILCKGDVPEMSDLH KMMLGKPTKLESQFRLTYSMILNLLRVEQLRVEDMMKRSFSEFHHQKDVSKHKVTIDQLH KQIAQIRPIECYLCSVDLEKYHESCRDYQCLRRKLQEVVLSHPAAIKALTAGRVIVISNS FHSNQLGIILNSTMAANNERVFTCLVLCDKNKSVKSQTEKVPGSEEVTPVTNTDLFLPEA PCGHDLVQVKAKDISTVTVKSIRVEANKIMDDIKKRQMPRFKDDPPGKSVTTATQELLRM VESNIHGLAGLDPVKDLHLRDIDLVEQFRSLQLIEDSFRGYQCINCPHFTEHFREHDRNV KLKEEYKHLKFLLSDESLMLLPEYEQRVQVLKHLNYIDENNAVQLKGRVACEISNHEIMI TELVFENILTELHPTEIAALLSCVVFEQKNCSEPKLAPELVKGKDSILFIAQKITAHQRR CGMNLVGDYEDEFKFGLMEVVFEWARGLPFAEITGLTDVQEGIIVRCIQRLHETLRDVRN AARIIGDPVLYRKMEEASQMIKRDIVFAASLYTQ NT seq 3705 nt NT seq  +upstreamnt  +downstreamnt atggacctcgagggactaggagtggactttgatttggctgaagttggttgtcaaggaaag tttgtaccagttccaaaaagaaagaacaatgaaggttttcccaggaaaacactccccgcg ggtctgccacccatcctgccatcctggggggaagagcttgaggactatctgacctgtata gagcaggtgcccgtccatgacctcaacagtgcacaaagattctggccaagagaaccacac ccggagaacctgtaccatgcagaagtgtctggagttcaaaccacgatccaggtggataga aaccccaccactggggaattgctaggatacaaggaggaatatctggagagtacatccgag ggtaaaacttctctatccctcaggagacccccgggccctgccggtcaggatgtcaggggg agcagtgccaacttcccctttctgcctggtggtatggaagaagtagagaccatgctctct gaagacaaaacagaatttttggattttgaaaaagatttgttatcagtggcaccaggtatg atggagggtatgacctttaatgaccttgacattgcacccaaacagaaggaacccactttg ttgaatctagccgacctgatgtctgctgctgatcttgatgaatttaaccttggagatgat gaggacgaaggggaatccaagaatgaagaccatgatcaaggtcatatcctcggtgaggtc aaactggaaaaaagtgaaagtctggaaaaccttgtaaagattgatgaagacagggagact gagcgaggggtgagggtggggggtgaggggaggcgggaggagtgggctgtcaaggtggat gtggaccaccctgtggcagacttccaccagaggatcccagacatggcctacaagtgggag tttgagttggacgtgttccagaagcaagccatccttcacctggaaaaccacgagagtgtg tttgttgcggcccacacctctgctggaaaaactgtggtagccgagtatgccattgccctc tccatgaagcacatgaccaggacagtgtacacatcccctatcaaggctctgtccaatcag aaatacagagaattcaagcagacttttggagaggtgggactaattacaggagatgtccag attaaccagaccgcatcctgtctcatcatgaccacagaaattctcagatcgatgctgtac aatggatcggatgttataagagatctagagtgggtgatctttgatgaggtccattacatt aatgatgcagagagaggtgtggtgtgggaggaggtactcatcatgttaccgcagcatgtc catattatccttctgagtgcgactgtacccaacacacttgagtttgcagactggattggg cggacgaagaagaagaagatctttgtgatctccaccctgaagcggcccgttcctctggag caccacctgtacaccggcaccaccggcaagaccagcaatgaactgttcctcattgtggac ggcaagaaaaacttcctcaccagtggatacaataaggcactggaagcaaagaaagaaaaa agcaagtcttcacaagggtttggacccaaaggaacaaggggaggtcacccgaataaggac aagaatatctggatatcggtgattgacatgctcaaaaagaaggataaactaccggctgtg gcgttcacattttctaagaagaagattgatgagaatgctcagaacttgctgagtaaggac ctgacgacggccagcgagaagagcgagattcacatcttcttccacagcgctataaagaag ctgaagccccccgaccaaaagctaccacaggttctacaaatggagtccctcctgaagaat ggtataggagtgcaccacagtggaatactgcccatccttaaggaagtggtggagatgctg ttccagagagctctagtcaaaattctcttttccactgagacgtttgcgatgggagttaac atgccggcccgtactgtggtgtttgacagcatcagaaagaacgacgggacatgtttccgg gacctgctgcccggggagtacatccagatggcaggtcgggccgggcggcgagggctggac accaccggcacagtcatcatcctgtgtaagggcgacgtaccggagatgtccgacctacac aaaatgatgctggggaagcccaccaagttggagtcacagttccggctgacttactccatg atcctgaatctgctgcgcgtggaacagctgagggtggaggacatgatgaagcggagtttc tccgagttccaccaccagaaggatgtcagcaaacacaaggtcaccatcgaccagctccac aaacagatcgcgcagatccgtccaatagagtgctacctctgctctgtggacctggagaag taccatgagagctgtagagattaccagtgcctaaggaggaaattacaggaggtagtattg tctcatcctgcagccataaaagccctaacagcaggaagagtcattgtcattagcaatagt ttccatagcaaccaactggggatcattttgaactctacaatggcagctaacaatgagcgg gttttcacttgtcttgtattgtgtgataaaaataaatctgtgaaatcacaaacagagaaa gtgccaggcagtgaggaggtcactcctgtcacaaatacagacctctttttgcctgaggcc ccgtgtggccatgaccttgtacaggtcaaggccaaggacatcagtacagtgacagtgaag agtatacgtgtggaggccaacaaaataatggacgacatcaagaaacgacagatgcccaga ttcaaagatgaccctcctggtaaatctgtcacaactgctacccaggaattgctacgcatg gttgaatccaacatccacggtctggcggggctggacccggtcaaggaccttcaccttcgt gacattgaccttgtggagcagttcaggtctctacaactgatagaggacagctttaggggc taccagtgtatcaactgcccacacttcactgaacactttagagaacatgacagaaatgtg aaactgaaggaggagtacaagcacctaaagttcttgttgtcagacgaaagtctgatgctc ctgccggagtatgaacagcgggtccaggttttgaagcacctgaattacatagatgagaac aatgctgtgcagttgaagggtcgagttgcctgtgagataagcaaccacgagatcatgatc acggagctggtgtttgagaacatcctgaccgagctccaccccactgaaattgcggccctt ctctcctgtgttgtgtttgaacagaagaattgtagcgagcccaaacttgctccagaactt gtcaagggaaaagactccatactgttcattgctcagaagatcactgcccaccagcggcga tgtggaatgaacctagttggagactacgaggacgagtttaagtttggcctaatggaggtt gtgtttgaatgggctcggggtctgccctttgccgagatcacgggtttgactgatgtacag gagggaatcatagtgagatgtattcagagattgcacgagacgttgcgagatgtcaggaat gcggctcgtatcataggcgaccctgtcctgtatcgtaagatggaagaggcctcacagatg atcaaacgagacattgtatttgcagcatcgctctacacgcaataa

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