Magallana gigas (Pacific oyster): 117680959
Help
Entry
117680959 CDS
T03920
Name
(RefSeq) uncharacterized protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117680959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
117680959
03400 DNA repair and recombination proteins [BR:
crg03400
]
117680959
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117680959
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
117680959
DNA repair and recombination proteins [BR:
crg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
117680959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
M11L
AAA_22
Motif
Other DBs
NCBI-GeneID:
117680959
NCBI-ProteinID:
XP_065939352
LinkDB
All DBs
Position
4:24111393..24115285
Genome browser
AA seq
398 aa
AA seq
DB search
MADKAGICIIEENIKFKRGLQLLNLHCGTDINYLKPKQVVTIKQALKNDCISVLPIGYGK
SLIFEILPFVDFSFYDRQCLVLLICPLNVIIEQEIAKLGAKSIRASDLLYKDESKDLTPI
LYIVGHPEDITQPSILEEVSRLDRRTFIVVDEAHLVPQWGEEFRPMFRNICNLKSINSHL
TSILALTATASVKVQKSIASHLTMKKPVFLRSLPVLNSNIKMTIQERPSSTGGNNRVQSA
YDYIFKPVFINLLMNMNSFPLTIIYSKLKWCAYGYDLAKRILKEEMYNGTPCPENSRVVQ
YHSTQPENVNSQIIEDLKSNKKVKVVLATVALGMGADLRNVKHVIHAGPPTSPEVYVQEV
GRAGRDGQAAEAKLYFNNSDLAEKPIDNSSFAGTKALC
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaagctggtatttgcatcatcgaggagaacattaagtttaaaagaggattg
cagttattgaatttacattgtggtacagacattaactatctgaaaccgaagcaagttgta
acgataaagcaagccttaaaaaatgattgcatatcagtgttaccaattggatatgggaaa
tcactgatatttgaaattcttccctttgtggacttttcattctatgatcgacagtgttta
gttctgttgatatgcccattgaatgttatcatagagcaagaaattgcaaaacttggggcc
aagtccataagagcatcagacctcctttataaggatgagagtaaagacttgacaccaata
ttgtacattgttggccatccagaagatatcacacagccatctattttagaagaagtttct
cgacttgacagacggacattcattgttgtggacgaagctcacttggtgcctcagtggggg
gaagaattcagaccaatgtttagaaacatctgcaatttgaagtccattaactcacatctt
acatctatcttagcccttacagccactgcttccgttaaagttcaaaaatctatagcttca
catctcaccatgaagaagccagtttttctcagatcattacctgttcttaacagcaacatt
aagatgactattcaagagcgtccttcttcaactggtggaaataacagagtccagtctgca
tatgactacattttcaaacctgtatttattaatcttcttatgaatatgaattctttccct
ctgacaataatctattccaagcttaaatggtgtgcttatgggtatgatctagcaaaacgc
atactgaaagaggagatgtataatggtactccttgtccagaaaacagccgtgtcgtacag
tatcactcaacgcaacccgaaaatgtgaattcacaaattattgaggacttaaaaagcaac
aagaaggttaaagttgtgttggccactgttgctctgggaatgggtgccgaccttcgaaat
gtgaagcatgtaattcatgctggcccaccaaccagtccagaagtctatgtacaagaggtt
ggacgagctggaagagatggccaggcagcagaagccaagttatatttcaataactctgat
ctagcagagaagcctattgataacagttccttcgctggaacaaaggcattatgttag
DBGET
integrated database retrieval system
