Magallana gigas (Pacific oyster): 117688812
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Entry
117688812 CDS
T03920
Name
(RefSeq) uncharacterized protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117688812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
117688812
03400 DNA repair and recombination proteins [BR:
crg03400
]
117688812
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117688812
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
117688812
DNA repair and recombination proteins [BR:
crg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
117688812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-GeneID:
117688812
NCBI-ProteinID:
XP_034323191
LinkDB
All DBs
Position
6:complement(16915278..16917852)
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AA seq
455 aa
AA seq
DB search
MASFDECIEFALKNCPLFQEKHIILKEKQLQTLKTLYDGNDCISILPTGYGKSIIFQLLP
WFTQQKLQRDKPMCVLVVSPLNSLMIDQVMSLRKGGVKACYLNITGTHGITYEESIDDEE
DIDFTSSECLESDVPFEQLANGEFILIYSHPEAFIKTKFSRLLRSKLYQDIVGAIVVDEV
HMVSEWGDNFRPAFKNLGEVVCVFEDAMHLLLTATATVSATETLSKVMNLKAPVVVAENV
DRPNIFLEIRNRLPNIKKFEKYDDVIHPIALELKEKMHAFPVTIMYIENLEAMGYFFQFL
MCELQDNAYDGEQIPQNRIFGQFHKDYPESMKQIIIQELTKTNPKLRLILATVALGMGLN
APSVERIIHCRPPTNLEKYLQEIGRAGRNGQPSTAVMFFNKNDIAKNRKGMTEEIRMYCT
EQKCLRLMLVNYFGFENFIFSGERENCCSNCKVYM
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatttgatgagtgtatcgagtttgcattaaaaaactgtcctctatttcaagaa
aaacacataattctcaaagaaaaacagctacagacattgaaaacactatatgacggaaac
gactgtatttctatattacctacaggatacggtaaaagcataatttttcagttactgcct
tggttcactcagcaaaaactgcaacgcgataaacctatgtgtgtgttggtcgtttcacct
ttgaattctttgatgattgatcaagtgatgagcttaaggaaagggggtgttaaagcctgc
tatttgaatataacaggtacacatggtattacatatgaagaaagtattgatgatgaagag
gatattgatttcactagttcagaatgtctggaatctgacgttccatttgaacaactggca
aatggagaattcatcttaatatattctcatccagaagctttcattaaaactaagttttcc
agactgctgcgatccaaattgtaccaggatattgttggagctattgttgttgatgaagtc
cacatggtttctgaatggggagataattttcgccccgcatttaagaaccttggtgaagtg
gtctgtgtgttcgaggatgcaatgcatttactcctaacagcaacagcaactgtgagtgcc
actgaaactctttccaaggtaatgaatttgaaggcaccagttgtggttgctgaaaatgtg
gacagaccaaacattttcttagaaattagaaacagattacctaatattaaaaaatttgag
aaatatgatgatgtgatccacccaattgcactagaactgaaggaaaaaatgcatgcattc
ccagtaaccatcatgtacattgaaaatctagaagcaatgggatatttttttcaatttctc
atgtgtgagcttcaggataatgcttatgatggtgaacaaatccctcaaaataggatcttt
ggacagtttcataaagattatcccgagtcgatgaaacaaatcataattcaagaactgacc
aaaaccaacccaaagcttaggttaattctggcgacagttgctctaggcatgggattgaat
gcaccaagtgtcgaacgtatcattcattgcagaccgccaacaaatctagagaagtatttg
caagaaataggacgtgccggacgtaatggacaaccttctacagctgtaatgtttttcaat
aaaaatgacattgccaaaaaccgaaagggaatgacagaggagattagaatgtattgtact
gaacaaaaatgtttaagacttatgttggttaactactttggtttcgaaaatttcattttt
tctggtgagagagagaactgctgttcaaactgtaaggtatacatgtag
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