Magallana gigas (Pacific oyster): 117691618
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Entry
117691618 CDS
T03920
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC2-like isoform X1
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117691618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
117691618
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117691618
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
117691618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
117691618
NCBI-ProteinID:
XP_065926953
LinkDB
All DBs
Position
9:46086891..46160032
Genome browser
AA seq
1139 aa
AA seq
DB search
MDDIEDIMRMDKEKLAAPIKTIEEKWKLLPAFLKVKGLVKQHIDSFNFFINVEIKNIMKA
NDKILSDADPNFYMKYLNIYVGMPDVEEGFNITKPISPHECRLRDMTYSAPITVDIEYTR
GNQRIVRNNLPIGRMPIMLRSSNCVLNGKSPAEMAKLNECPMDPGGYFITRGTEKVILIQ
EQLSKNRMIVDTDTGRNRSIECSVTSSTHERKSKTYVSTKHEKFYLRHNTFTEDIPVAIA
FKAMGMECDQEIVQMIGSEEEILTSVAPCLEECHRAQVFTQLQALKYIGQRVRQRRVWGG
SKKTKVDEAREALHDIVLAHVPVVEWNFKLKAAYLALMVRRVILAKGEQVKGDDRDYYGN
KRLELAGQLLSLLFEDLFKKFNSELKRIADMTIPKPRVAQFDIIKHMRQDQITNGLVNAI
STGNWSIKRFKMERAGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGML
CPSDTPEGEACGLVKNLALMTHITTDMEEDPIIRLAFNLGVEDIQLLSGEEMTSSRVYLV
FLNGNILGVIRDHKKLVRTFRLMRRSGYISEFVSVCTNHTHKCVYISTDGGRLCRPYIIV
QKGQPLVKQRHIEELTQGFRSFDDFLKEGLVEYLDVNEENDCMISLYESGITRETTHLEI
EPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLCYPQAPL
VKSKTIELIHFDKLPAGQNATVAVMSFSGYDIEDALVLNKASLDRGFGRCLVYRKQACTL
KRYTNQSFDKVMGPMVDASTHKPIWKHESLDSDGICSPGERMENRQVLVNKWMPTVTMNP
IQQSPTTQGPPQGPEYREVPITYKGAEACYIEKVLISSNPEEAFLIKILQRQTRRPEIGD
KFSSRHGQKGVCGLIVPQEDMPFTDLGICPDIIMNPHGYPSRMTVGKLMELLGSKAGVLE
GKFHYGTAFGGDKVCDLSEDLVKHGFNYLGKDFVTSGITGEPLEAYIFFGPIYYQKLKHM
VLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF
EVDVCGECGLLGYSGWCEFCKSSRHVSTLKMPYACKLLFQELQSMNIVPRLSLKRYNEV
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggatgatatagaagatataatgcgaatggataaagaaaagctggcagcgccaataaaa
actattgaggagaaatggaaattgctgccagcttttctgaaggtgaaaggactcgtcaag
cagcacattgactccttcaatttctttatcaacgtagagattaaaaatatcatgaaagct
aacgacaagatcctcagtgatgcagaccctaacttttatatgaaatatttgaacatctat
gttggaatgcccgatgtagaggaagggtttaatataacgaagcctatctctcctcatgaa
tgtcgtttacgagacatgacctactcagcacctattaccgtggatattgagtacactcgc
ggaaaccagagaatcgtccgcaataatctgccaattggaaggatgcccatcatgttacgc
agctcaaactgtgtcctgaatgggaaaagtccagcggaaatggcgaaactaaatgaatgt
cccatggacccagggggttacttcatcacccgggggacagaaaaagtcatccttatccag
gagcagctatctaaaaatagaatgatagtggacacagataccggacggaaccgctctata
gagtgctctgtaactagttccactcatgaacgcaagagtaaaacgtacgtctctacaaaa
cacgagaaattctatctaaggcacaacacgttcaccgaggacattcctgtagcgatagcc
ttcaaggcgatggggatggagtgtgaccaggagattgtccagatgattgggagtgaggag
gagatcctgacatccgtggcaccctgtctggaggagtgtcaccgcgctcaggtgttcact
cagctacaggctctgaagtacattggacagagagtaaggcagagacgggtatggggagga
tccaagaaaaccaaagtggatgaagccagagaggctctgcatgacattgtcctggcacat
gtaccagttgtagagtggaactttaagctgaaggctgcataccttgcactgatggtccga
agggtcatcctggcgaaaggtgaacaggtcaaaggtgacgacagagattactatggcaac
aagaggctggagttggccggacagctcctctcgctgctgtttgaagatctcttcaagaaa
tttaactcagagctgaagaggatagcagacatgacgatccccaaaccccgagtggctcag
tttgacatcatcaaacacatgcgacaggaccagatcactaacggcctggtcaatgccatt
tctacagggaactggtccatcaagagattcaagatggagagagctggagtgactcaggtg
ctgtctcgtctctcctttatctcggccctggggatgatgactcgcatatccagccagttt
gagaagacaaggaaagtgagtggtcccaggtctctacaaccgtcacagtgggggatgctg
tgtccctcagatacaccagaaggggaggcatgtggattggttaaaaacctggctctgatg
actcacatcaccacagacatggaggaggaccccatcatccgcctggccttcaatctgggg
gtggaagacatccagctgctcagtggggaggagatgaccagctccagggtctatctggtc
ttccttaatggtaacattttgggggtgatccgtgaccacaagaaacttgtacggactttc
cggttgatgcgacggtcggggtacatcagtgagtttgtgtctgtgtgcaccaaccacacc
cacaaatgtgtctacatctctacagacggaggaagattgtgtaggccttatatcattgta
cagaagggacagcctcttgttaaacagagacacatagaggagctgactcaggggttcaga
agttttgatgacttcctgaaggagggactggtggaatacctggacgtgaatgaggagaac
gactgtatgatctcactgtacgaatcgggaatcaccagggaaacaactcatctggagatc
gagccgttcaccattctgggagtctgtgcaggattgattccctacccccaccacaaccag
tcccccaggaacacctaccagtgtgccatgggcaagcaagcgatgggtaccattggatat
aaccagaggaatcgtatagacaccttgatgtacttgttgtgctacccacaggcacctcta
gttaaatctaagacgattgagcttatccactttgacaagttaccagccggacaaaatgcc
actgtcgcagtgatgagtttcagtgggtacgacattgaggacgcccttgtcctgaacaaa
gcttctcttgatagaggttttgggcggtgtctagtgtacaggaagcaagcctgcacccta
aaacgctacaccaaccagagctttgacaaggtgatgggaccgatggtggacgccagcacc
cacaaacctatctggaaacacgagtctctcgactccgatggtatctgctcgccaggggag
agaatggaaaaccggcaggtgcttgtcaacaaatggatgcccactgtgacaatgaatcca
attcaacagtcacctacaactcagggacctccacaggggcctgagtatagggaggtcccc
ataacatataaaggagcggaggcctgttacattgagaaggtgctgatttcgtccaatcct
gaggaggctttcttaatcaagatattacagcgacagacgcgtcggccagagattggagac
aaattcagcagcagacacggtcagaaaggggtttgtggattaattgtcccacaagaagat
atgccattcactgatctgggtatttgtccagacattataatgaatccccatggttacccg
tccagaatgacggtcggtaagctgatggaactgttgggaagtaaggccggggtcctggaa
gggaaattccactacggaacagcatttgggggagacaaagtctgtgatttatcagaggat
ctcgtaaaacatggatttaattatctcggcaaggactttgtaacctcaggaataactggg
gagccgctggaggcctacatattctttggccccatatactatcagaaactgaagcacatg
gttctagataagatgcatgcccgagccaagggaccgagagcggtactgactcgacaacct
acagaggggcgatctcgagatggaggtctgagattgggagagatggaacgagattgtctc
attggttatggagcaagcatgctgctactggagagactgatgatatctagcgacgccttt
gaggtggacgtatgcggagaatgtggactcctgggatactcgggctggtgcgagttctgt
aaatcctcacgtcatgtctccactctcaaaatgccgtacgcctgtaaactgttgttccag
gagttacagtcgatgaacattgtgccaagactatctctaaaacgttacaatgaagtctag
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