Magallana gigas (Pacific oyster): 136274598
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Entry
136274598 CDS
T03920
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crg03016
]
136274598
Enzymes [BR:
crg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
136274598
Transfer RNA biogenesis [BR:
crg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
136274598
Prokaryotic type
tRNA splicing ligases
136274598
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3368
Motif
Other DBs
NCBI-GeneID:
136274598
NCBI-ProteinID:
XP_065937895
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All DBs
Position
4:complement(26806381..26812852)
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AA seq
407 aa
AA seq
DB search
MAAFDMSNKDAVVSPGGVGFDINCGVRLLRTNLMEKDVAPLKEQLAQCMFDHIPVGVGSK
GIIPMTAQNLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPGKVSNRAKKRGLPQ
LGTLGAGNHYAEIQVVDEIYNKFAAKKMGIECKGQVCVMIHCGSRGLGHQVATDALVAME
KAMKRDNIKVNDRQLACAKIYSQEGQDYLKGMAAAANYAWVNRSSMTFLCRQAFAKMFDS
TPDDLDMFMIYDVSHNIAKVEEHFVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQP
VLIGGTMGTCSYVLTGTQQGMDETYGTTCHGAGRALSRAKSRRNLDYTEVLSALEEKGIS
IRVASPKLVMEEAPESYKNVTDVVDTCHMAGISKKAIKLRPIAVIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctttgacatgagtaacaaagacgcagtagtctcgcctggaggggtggggttc
gacattaactgtggggtccgcctgctccgtaccaatctgatggagaaagatgtggcccct
ctcaaagaacagctcgctcagtgcatgtttgaccacatcccagtcggtgtgggctctaag
ggaatcattccaatgacagcacagaatttagaagaggcattagaaatgggcatggactgg
tcactcagagaagggtacgcgtgggcggaggacaaggagcactgtgaggagtatgggagg
atgttacaggccgaccccgggaaagtcagcaaccgggccaagaaaaggggactaccccaa
ttgggaactctgggagccggcaaccattatgctgagatacaggtggtggacgagatctac
aataagtttgccgccaaaaagatgggcatcgagtgtaaaggacaggtgtgtgtgatgatc
cactgtgggagtcgggggctgggccaccaggtagcaacagatgctctggttgctatggag
aaggcaatgaagcgtgacaacattaaagtcaacgacagacaactggcgtgtgccaagatt
tactcccaggagggtcaggactacctcaaaggaatggctgccgccgctaactatgcgtgg
gtcaaccgctccagcatgaccttcctctgtagacaggcctttgcgaagatgtttgacagt
accccagacgaccttgacatgtttatgatttatgacgtgtcacacaacattgccaaagtg
gaggagcattttgtggacgggaaacaaaagactttactggttcacaggaagggctccacc
agggccttccctccccaccaccccctcattcctgtagattatcagctgactggacagcct
gttttgattggaggaaccatgggaacgtgtagctacgtgctgactggtacacagcaagga
atggatgagacgtacggaaccacgtgccacggagctgggcgagctttatcccgagccaaa
tcccggcgtaatctggactacacagaggtcctgtcagctttggaggagaaaggaatcagc
ataagagtggcttcacccaagctggtcatggaggaggcacccgaatcttacaaaaatgtt
acagatgttgtagatacttgtcacatggcaggcattagcaaaaaggccataaagctacgt
cctattgcggtcatcaaaggctaa
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