Magallana gigas (Pacific oyster): 136274906
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Entry
136274906 CDS
T03920
Name
(RefSeq) probable ATP-dependent DNA helicase RecS
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136274906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
136274906
03400 DNA repair and recombination proteins [BR:
crg03400
]
136274906
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
136274906
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
136274906
DNA repair and recombination proteins [BR:
crg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
136274906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
DUF1661
AAA_34
Motif
Other DBs
NCBI-GeneID:
136274906
NCBI-ProteinID:
XP_065938853
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All DBs
Position
4:complement(50554815..50556978)
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AA seq
453 aa
AA seq
DB search
MATDAMKKVSELFNVSNVKKEQEQMLEMLLRRQDCIAVLPTGYGKSLPYQMLVPVRREMK
TSDMNCKIIVCSPLMALMCDQCERLNSIPGIRAVYKGGSQDNELIQSGDFDYLFASPEYL
VGDKTFRAKIQTFDVSTIVVDEFHTISTWGEEEGKQAFRKWFSHIGELRSLFPKASVLAL
SATCTKKISRRVSKILQLGTDTTEIRISPNRDNIKVVVKKIPNTTEMAMVWIIDALSDGT
LPRTILYCTSIKDASNIYSYIITELPQCSEVQMFHSETPEDVKNKILQDLLDEKSATKLV
IATSALGMGVDIRQYYSVILYGAPKSIVDTVQEIGRVGRDGKDSVALLLFNSYHLRIVDT
EVKDVFTSKDCRRVSMLEPFLSEGELIKEKSRTISHSCCDLCADRCDCGTCDLTPIEKLF
MVDTVEFSDLSSSDTEPYNYDEIDDNIDDLVSD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagatgcaatgaagaaagtgagcgagttgtttaatgtttcgaatgtaaagaaa
gagcaagaacagatgttggaaatgcttttgagaagacaggactgcatcgcagtgttaccc
acaggctacggtaaatccttaccataccaaatgctcgtaccagttcgacgggaaatgaaa
acgagtgacatgaactgtaaaattatcgtttgttcaccattaatggctttaatgtgtgat
caatgcgaaagactgaacagcattccaggcataagagctgtatataaaggaggctctcag
gataatgaattaatacaaagcggggatttcgactacctctttgcatccccagaatatctt
gttggagataaaacgttccgggccaagattcaaacctttgatgtgtccacgatagttgtt
gatgagttccataccatttcaacctggggtgaagaggagggaaaacaagcattccgcaaa
tggttttcgcacattggtgaactgagatcactttttcccaaagcctcagtgcttgcattg
agtgctacgtgcaccaagaaaatatcaagaagagtttcaaaaattctccaacttggcacc
gacacaaccgaaattagaatttcacccaacagagataacatcaaggttgttgtgaaaaaa
attccaaatactacagagatggccatggtttggattattgatgctttatcggatgggacg
ttaccaagaacaattctgtactgtacatcaataaaagatgcctcaaatatatattcctac
ataataacagaacttccacagtgttccgaggtgcagatgtttcattcagaaaccccagag
gacgtcaagaacaaaattctgcaagatttattggatgaaaaaagtgccaccaaacttgtt
atagccacaagtgcactaggtatgggagtggacattagacagtattatagtgtcattctt
tatggtgcccccaagagcatagttgacactgtgcaagaaatagggagggtggggcgtgat
ggaaaggactctgtagcccttcttctcttcaattcctaccacctgaggatagttgacact
gaggtaaaggatgtttttacctctaaagactgcagacgtgtctccatgttggagcccttt
ctatcagagggagaacttataaaagaaaagagtaggacaatatcacattcatgctgtgat
ctctgtgcggacaggtgtgactgtgggacatgtgatttgacccctatagagaaacttttt
atggtggatactgtcgaatttagtgaccttagttcatctgacaccgaaccttataattat
gatgagattgacgacaatattgatgatcttgtgtctgattaa
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