Chryseobacterium rhizoplanae: KB553_00620
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Entry
KB553_00620 CDS
T08349
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
crhi
Chryseobacterium rhizoplanae
Pathway
crhi03030
DNA replication
crhi03430
Mismatch repair
crhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KB553_00620 (holA)
03430 Mismatch repair
KB553_00620 (holA)
03440 Homologous recombination
KB553_00620 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crhi03032
]
KB553_00620 (holA)
03400 DNA repair and recombination proteins [BR:
crhi03400
]
KB553_00620 (holA)
Enzymes [BR:
crhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KB553_00620 (holA)
DNA replication proteins [BR:
crhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KB553_00620 (holA)
DNA repair and recombination proteins [BR:
crhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KB553_00620 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delta2
DUF3201
Calici_coat
Motif
Other DBs
NCBI-ProteinID:
UCA60048
LinkDB
All DBs
Position
136103..137140
Genome browser
AA seq
345 aa
AA seq
DB search
MKELDLILKNIKNKEVLPIYFFHGEEAYFIDVAVKALEHNFLEEDEKAFNQTVTYGKDTS
YQEVLSLARQFPMMGDKQVIIVKEAQDLKFNEEENRILEAYVENPVPSTVLVFAHKHKKL
DSRKKAAKALDRANALFLSESVKESNLPKWISDECTKLNIKTAPNISHLLAEYLGNDLSR
IANELNKLKIILKEGEVLDGTIVENHIGISKEYNIFELQKALGTKNANAAFKIAHFMGKN
PKNNPFVMMLASLYNYFSNVIIYQTMAGQPPQAIASQMGVNPYFVKDYAESARLYPLKHA
TRVISILREFDMKGKGLGAVNMGEAELIKELVYKIINVDKIKMKV
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattagatttaatcctcaaaaatattaaaaataaagaagttttacctatttat
tttttccacggagaagaagcctactttattgatgttgccgtaaaagcccttgagcacaac
tttttggaggaggatgaaaaagccttcaaccaaactgttacatacgggaaagatacctct
tatcaggaagtgctttccctggcaagacagtttccgatgatgggcgataagcaggtgatt
atcgtaaaagaagcccaggacctgaagtttaatgaggaagaaaacagaattctggaagct
tatgttgaaaatcctgttccttccacggtattggtttttgctcataagcacaaaaagctt
gacagcaggaaaaaggcggctaaagctttggatagggccaatgcacttttccttagtgaa
tctgttaaagaaagcaaccttcccaaatggatttctgatgaatgcacaaagttgaacatt
aaaacagcccctaatatttcccaccttttggcagaatatcttggaaacgacctttcaaga
attgccaatgaactgaataaactgaagattatccttaaagaaggtgaagtgctggacgga
actattgttgaaaaccatatcgggatcagcaaagagtacaatatctttgaacttcagaag
gccttgggaacaaagaatgccaatgcagcctttaaaattgcccattttatgggtaaaaat
cctaagaataacccttttgtaatgatgctggctagtctttataattacttttccaatgtg
attatttatcagacaatggcggggcagccaccgcaggccatagcctctcagatgggtgtg
aatccttattttgtgaaagactatgcagaaagtgcgaggctgtatcctttaaaacatgcc
acaagggtcatttctattctgagagaatttgatatgaaaggaaaagggctgggcgctgtg
aatatgggagaagcagaacttattaaggaattggtgtacaagatcattaatgtagataag
attaaaatgaaagtgtga
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