Chryseobacterium rhizoplanae: KB553_12405
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Entry
KB553_12405 CDS
T08349
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
crhi
Chryseobacterium rhizoplanae
Pathway
crhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KB553_12405 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crhi03021
]
KB553_12405 (rpoC)
03400 DNA repair and recombination proteins [BR:
crhi03400
]
KB553_12405 (rpoC)
Enzymes [BR:
crhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KB553_12405 (rpoC)
Transcription machinery [BR:
crhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KB553_12405 (rpoC)
DNA repair and recombination proteins [BR:
crhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KB553_12405 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UCA57865
LinkDB
All DBs
Position
complement(2747704..2751969)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPIENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTDTMKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCKLPVKENGEIVTRLIETTVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
KISERILGRVSLHNIYDPESDELIAEADQVITEQLAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNDSRTPLMVANVPYGSILSVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaagactcaagaggcgaggttttaaaaccggaaactattaactacaga
actcacaagcctgaaagagacgggctattctgtgagaaaatctttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttactgagaaaaaagtaagaagagagagaatcgggcacatcaacctt
gtagttccaattgcacacatctggtatttccgttcattaccaaacaaaatcggatacctt
cttgggattccttctaagaaattagatatgatcatctactatgaaagatatgtagtgatt
caacaaggtattgctaagaaattagacggttctgatttcgagaacatggaattccttaca
gaagaagagtaccttgatatcatggaaactcttcctattgagaaccaatatcttgatgat
tccgatccaaacaaattcatcgctaagatgggtgctgaagcggttgaggaattgttaaag
agaattgatcttgatgcattgtcttttgacttgagacacaaagctcataatgaaggatct
aagcaaagaagaactgaagctcttaaaagattgaacgttgtagaagcattaagaggtgct
aatacaagaatgatcaacagaccagagtggatgattatgcgtgttcttccggttatccca
ccagaactgagaccattggttccattggatggaggacgtttcgcaacttctgacttaaat
gacctttatagaagagttatcatcagaaataaccgtttgaagagattattggagattaaa
gctcctgaagtaatcctgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
tttgataacacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacctattaggaaaaagg
gttgactactctgcacgttctgtaattgttgtaggtccaaacttacagcttcacgaatgt
ggtattcctaaagatatggcagctgagctttacaaaccgttcatcattagaaaactaatc
gagagaggtattgtaaaaacagtaaaatctgcgaagagaattatcgatagaaaagaacca
gtagtttatgatatccttgaaaacgtgatgaaaggtcacccggtactattgaacagggca
cctacgcttcacagacttggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccagctacacccgttagtaactacggctttcaacgccgatttcgatggtgaccagatg
gcggtacacttgccgttaggaccagaagcgatccttgaagctcagttattgatgttaggt
tctcaaaacattttgaaccctgcaaacggttctccaattacggtaccatctcaggacatg
gttcttggtctttatttcatgactaaagaattaagctctactgataccatgaaagtaaaa
ggagaaggtcttgcattctattctcctgaagaagcggaaattgcttacgcagaaggaaaa
gtttccctaaacgctaaggtaagatgtaaattacctgttaaggaaaacggagaaatcgta
acaagactgatcgaaactactgtaggtagaatcctgttcaaccagatcgtacctaaacag
gtaggatatatcaatgaacttcttaccaagaaatcattgagaaatgtcatcggtaagatc
cttgctgatacagatttccctacaactgtgaagttccttgatgcaatgaaagacttaggt
tactcaaacgcattcaaaggaggtctttctttctcacttggggatattgtagttcctgtt
gagaaaaaacagatgattgcacaatcaattgaaactgtagacgaaattagagctaactat
aacatgggtctaattaccgatacagaacgttataaccaggtaatcgacgtttggacaaac
actaacgccggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtatacatgatgcttgattctggggcgaggggttctaaggaacagatccgtcag
ttatcagggatgagaggtttgatggcgaaaccgcagaaagctggttctaccggtgcggag
attatcgaaaacccgatccttgcgaactttaaagaaggactttccatcttagagtacttt
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaaaactgccgatgct
ggttacctaaccagaagattggtagacgttgcacaggacgttatcgttacagaagacgat
tgtggaactttaagaggaactgaagttactgcacttaagaaaaatgacgagatcgttgaa
aaaatctctgaaagaatcttaggtagagtatctcttcataatatctatgatcctgaaagt
gatgaattaatcgctgaagcagatcaggtaatcactgagcagttagctaagagaattgaa
gaagcaggattagaagcagttgaagtacgttctccacttacttgtgaagctaagaaaggt
atctgtgctaaatgttacggtagaaaccttgcaactggtaagatgatccacatgggtgaa
gcagtaggtgtaattgcagcacagtcaattggggaaccgggaactcagcttacgttgaga
accttccaccaagggggtactgcaggaaacgtatcagaaaacccatcaatcgttgcaaga
agagacggtatcgttgaaatggatgaagtaagaacaattacttctgaagatgaaaacggt
aacaccgctgaggttgtagtttcccgttcaacggaattcagattagttgctgataatgat
tctagaactccattaatggtagctaacgtaccttacggatctattctatctgtgaaacca
ggtgataaagtgaagaaaggagatacgatctgtagatgggatccgtataacgcggtaatt
attgctgaaacttcaggtaaggtagaatacgaggatatcatccagggtatttcattccag
cttgaaattgacgaacagacaggatttgaagagaaagtaatctctgaatccagaaataag
aaagcagtacctaccttgaaggtggtagattctaaaggagttgagcaaaaagcttacaac
ttaccggtaggagcccacttgatggtaaacgatggtgagaaaattaaggctggtaaagtc
ttaatcaagatcccgagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccagcagttgttactgaaattgac
ggggtagtttcttacggaaaaattaagagaggtaacagagaattgatcgttgaagctaaa
actggagaaagaaaaatttacttagttaaattatctaaccagatcttagtacaggagaat
gacttcgtgagagctggttcgccactttctgacggttcaattactccagacgatatctta
agaattaaaggtccaacagctgttcaggaatacttagtaaacgagatccaggaagtttac
cgtctacagggggtaaaaatcgacgacaagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgtggatggaggtgatactcaattccttgaaggagctcttgagcat
aagtatgacttcttggaagaaaataacagggtattcggtcttaaagtagtagtagatgct
ggtgattctaaagaatttaaaccaggtcagatgattactgcaagagaattaagagacgaa
aactctaagttgaagcgtgaagatttggcattagtagaagtaagagaagctcttcctgct
acagcaactcctgtactgcaaggtattacaagagctgcccttcagactaagtcattcatg
tctgcagcatcattccaggaaacaactaaagttcttaacgaagcagcagttgctggtaag
atagacgatcttaacggtcttaaagaaaatgtaattgtagggcacagaattcctgcaggt
acaggtcttaaagagtatcagaacgttattgtaggttctaagaaagaattcgaagacctt
aactaa
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