Chryseobacterium rhizoplanae: KB553_14250
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Entry
KB553_14250 CDS
T08349
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
crhi
Chryseobacterium rhizoplanae
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crhi03016
]
KB553_14250
Enzymes [BR:
crhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KB553_14250
Transfer RNA biogenesis [BR:
crhi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KB553_14250
Prokaryotic type
tRNA splicing ligases
KB553_14250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UCA58213
LinkDB
All DBs
Position
complement(3163823..3165214)
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AA seq
463 aa
AA seq
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MGNLKLKGKDILKLGYPNNQSINVALEVMKRNFATKNIQYVKSLLKEILINPEQFEKDLT
FGQIAETLLSSKKTEKRMLNSQRADFQIFGNNISEEAKNQLYTALKLPVSVQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLNGAKDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDLIPVLRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAVEQCPLPKEAQQFAWLDLSTHLGLEYWTA
MNLAGDYAAACHDDIHRRLVKAVGGRVKARIENHHNFAWKETHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDSLNSASHGAGRAHSRGECRSLFTQNDIKKELKLKDV
TLMGGNAEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatccaaacaatcaa
agcattaatgtagctctggaagtaatgaaaagaaattttgcaactaaaaatatccagtat
gtaaaatctcttctcaaagaaattctgatcaatccggaacagttcgaaaaagatttaacc
ttcggacagattgcagaaaccttgctttcatccaaaaaaacagaaaaaagaatgctgaat
tcgcaacgtgcagactttcagatcttcggaaataatatctcggaagaagcaaaaaatcag
ctgtacacggcattgaagcttccggtttctgttcaaggcgcactaatgcctgatgctcac
agcggatatggacttccgattggaggtgttctggcggtagaaaatgcagtgattccctac
ggagtaggaatggatatcggctgtagaatgagccttagtattttggatacaccggtatca
tatctgaacggggcaaaggataaatatgaaaaagcccttgcagaacatacaaagtttgga
atgtatgagactcataaatctcatatagatcacgaaatctttgacagagatacatttgac
cttattcctgtcctaagaaggttaaaaggaaaagccatcaaacagatgggatcctcaggt
ggaggaaatcattttgtggaatttggagaagtggaaatcactgaggaagatgaacaaatt
ggcttaccaaaaggaaaataccttgggattctttcacacagcggatctcgtgggttgggc
gctgaaattgcccagtattattcaagagtagcagtagaacaatgtccactgcctaaagaa
gcacagcagtttgcatggctggacttgagtactcatcttggtttggaatactggacagca
atgaaccttgcaggagattatgctgcagcctgtcatgatgatatccacagaaggctggta
aaggcagtaggaggaagagttaaagccagaatcgagaatcatcacaacttcgcctggaaa
gaaactcacaacggaaaagaagtgattgttcacagaaaaggagccactccggccaatgaa
aatgagttgggaatgatcccgggatctatgacagccaaaggatttattgtccgtggaaaa
ggaaatcccgattcactgaactccgcttctcatggagcgggtagagcacactcaagagga
gaatgcagaagccttttcactcagaacgacatcaagaaagaactaaaacttaaggatgtt
acactcatgggtggaaatgcagaagaagcaccaatggcttataaagatattcatgaagtc
atgaatgcacaaagtgaattggtagatattctgggaacattccagccgagaattgtaagg
atggacaggtaa
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