Chryseobacterium rhizoplanae: KB553_17220
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Entry
KB553_17220 CDS
T08349
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
crhi
Chryseobacterium rhizoplanae
Pathway
crhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB553_17220 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crhi03021
]
KB553_17220 (rho)
03019 Messenger RNA biogenesis [BR:
crhi03019
]
KB553_17220 (rho)
Transcription machinery [BR:
crhi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KB553_17220 (rho)
Messenger RNA biogenesis [BR:
crhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KB553_17220 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Rho_N
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UCA58781
LinkDB
All DBs
Position
3802845..3804665
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AA seq
606 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSNENDKIFAILDFQASNPKVAKDYFNATETS
ANTEEAPAEKTAKAPVKKAAPKKAPAKPKATAKAPAEPKVEENVEEITPVAEEIKAEEPK
TETVAATASEDASAANPAKKKRKRVSASTGNAETSQEKTEAPKNTEPQEPVQAEEKPHNP
QQPQANRPQKGHNHPQNGGNQNKNQNQHQHQNPNQNQNRHSEKAEEQQDHKKEFNFDGMV
SIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTGDTVKGIVRLPKEGEK
YFSLLRPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGSGSTVSTRIVDLFAPIGKGQ
RAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERSVNAEVIASTF
DEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSGGVDAN
ALHRPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANR
RIYPAIDLVASSTRRDDLLLDEVTSQRMWILRKYLSEMNPVEAMEFVDKNIKGTLNNEEF
LMSMNK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaag
gatttgggcgttaaagttgcaagaaacagcaatgaaaatgacaaaatctttgcaattctt
gactttcaggcttccaaccctaaagtagcaaaagattatttcaacgccacggaaaccagc
gccaatactgaagaagctccagcagaaaaaactgcaaaggctcctgtaaagaaagctgct
ccaaagaaagccccggcaaagcctaaggcaactgcaaaagctccggcagaaccaaaagta
gaggaaaacgtagaagaaataacgccggttgccgaagaaataaaagcagaagagcctaag
actgaaacagtagcagcaacagccagcgaagacgcatctgcagctaacccggccaagaaa
aaaagaaaaagagtttctgccagtacaggaaatgcagaaacctcccaggagaaaacagaa
gctcctaaaaacacagaacctcaagagcctgtccaggcggaagaaaagcctcacaaccct
caacaacctcaggctaacagacctcaaaagggacacaaccatccacagaacggtggaaac
caaaataaaaatcaaaatcaacaccaacaccagaatcctaaccaaaatcagaacagacat
tctgaaaaggcagaggaacagcaagaccataaaaaagaattcaactttgatggaatggtg
agcattgaaggggtgttggagattttaccagacaactacggatttttacgttcttcagac
tttagctatatttcttctcctgatgatgtgtatgtttctacagcacagatcagaaatttc
gggttgaaaaccggagataccgttaaaggaattgtaagattacctaaagaaggcgaaaaa
tatttttcattattaagacctacggaagttaacgggcgtgatcttgcatttatcaaagac
cgtgtagcttttgaatatctcactccacttttccctgaagaaaaattcaacctggcagga
agcggatctacagtttctacaagaattgtggacctgtttgcacctattggtaaggggcaa
agagcaatgatcgtagcacagcctaaaacaggtaaaacgatgttgcttaaggatattgct
aattctatcgctgctaaccaccctgaagtatatatgatggtacttctgatagacgaacgt
ccggaagaggttactgatatggaaagaagtgtaaatgcagaggtaattgcttctacattt
gacgaggccgctgaaaaacatgtaaaagtggcaaacctggttttggctaaagctcagaga
atggtagagtgtgggcatgatgttgtgattctgttagactctatcaccagattggcaaga
gcttacaacactgtaacgccggcatccgggaaggttctttccggtggggtggatgccaat
gcacttcacaggccgaagagattcttcggagcagcaagaaaaattgaaggtggaggatct
ctaacaattattgctacggcattaattgatacaggttctaaaatggacgaagtaatcttt
gaagaattcaaaggtacaggtaacatggaacttcagttagacagaaaaattgctaacaga
agaatttatcctgctattgatcttgttgcatccagcacacgtagagacgatcttctgttg
gatgaagtaacttcacaaagaatgtggattctgagaaaatacctttctgaaatgaatcct
gtagaagctatggaatttgtagataagaacattaaaggaactcttaacaatgaggaattc
ctaatgtctatgaataaataa
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