Corynebacterium rhinophilum: QP973_005115
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Entry
QP973_005115 CDS
T11205
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
crhn Corynebacterium rhinophilum
Pathway
crhn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crhn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QP973_005115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crhn03019
]
QP973_005115
03009 Ribosome biogenesis [BR:
crhn03009
]
QP973_005115
Enzymes [BR:
crhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QP973_005115
Messenger RNA biogenesis [BR:
crhn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QP973_005115
Ribosome biogenesis [BR:
crhn03009
]
Prokaryotic type
rRNA helicases
QP973_005115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
PIN_9
AAA_22
Cj1289-like_C
Phage_NinH
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
XME06538
LinkDB
All DBs
Position
1035874..1037745
Genome browser
AA seq
623 aa
AA seq
DB search
MSITDNATGGVNEPEDFNKSESQDNSQGVNQDTRAANTSEGTGAESKDSANDNSQGFEHL
GLPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQLDPQ
ARHPQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRRGAQVIVG
TPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVALFSATMP
NAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRILEVITYDAIIVF
CRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV
ERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARLEEM
DLPSVDEVNEKRKEKFAQAITQSMDNKQADFFRNLVRKYSEDNDVAMDDIAAALAVMHQG
GKNFLLEDKPLPKPKKDRRDRDDRKRDRDFKGGGKNRGGSKRPDGDFETYRLDVGKRQNV
RPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKNMDPAVLDRLKDTRISGQLIKIQK
DTGRPPRRDGGGGGRKHVGRFRD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgtaaacgagccggaagattttaataagtcg
gaatctcaggacaactcgcaaggtgtcaaccaggacaccagggctgcgaatacttctgag
ggcaccggcgctgagtccaaagattcggccaacgacaactcccaggggttcgagcacctc
ggcttgccagataaaattctgcaagccgttgcgaaagtaggcttcaccacgccgtccccc
atccaagcagaaaccatcccgatcctgatggaaggccgcgacgtcgtgggccttgcacag
accggtaccggcaaaaccgcagccttcgcgctgccggtcttgtcccagcttgacccgcag
gcgcgccacccgcaggcgctcgtccttgcgcctacccgcgagctggccctgcaggttgca
gacgccttccaatccttcgcggaaaccctgaagggaatcgaggttcttcccatctacggt
ggtcaggcctacggcatccagctgtctggcctgcgtcgcggcgcccaggtcatcgtgggt
accccgggtcgcgtcatcgaccacctggaaaagggttcgcttgacctgtcccagctgcag
ttcctcgtcctcgatgaggccgatgaaatgctgaacatgggcttccaggaagacgtcgag
cgcatcctggaaagtaccccggaccgcaagcaggtggcgcttttctccgccaccatgcct
aatgccatccgccgcctgtccaagcagtacctgcacaacccggcggaagtaaccgttaag
tcggagcgccgcaccaacgacaacattaagcagcgtttcctgctgattccgcaccgcgca
aagatggatgccttcacccgcatcctcgaagtcattacctatgacgccatcatcgtcttc
tgccgtaccaagcacgagaccgaagaggtggccgaggccctgcgcgatcgcggctacagc
gccgctgccattaacggcgacatcgcccaggcgcagcgcgagcgcaccgtcgaccagctc
aaggatggccgcctggacatcctcgtcgctaccgacgtcgccgcgcgtggccttgacgtc
gagcgcatcacccacgtggtgaacttcgatatcccgaacgataccgagtcctacgtgcac
cgcatcggccgtactggccgtgccggccgctccggcgaggcaatcttgttcgtcaccccg
cgcgagcgccgcatgctgcgctccatcgaacgcgtgaccaatgctcgcctcgaagagatg
gacctgccgtccgtcgatgaggtcaatgagaagcgtaaggaaaagtttgcgcaggccatt
acccagtccatggacaacaagcaggccgatttcttccgcaacttggtacgcaagtactcg
gaagacaacgacgttgccatggacgacatcgcggctgcgttggccgtcatgcatcagggt
ggcaagaacttcctattggaagacaagcctttgcccaagccaaagaaagaccgccgcgat
cgcgatgaccgcaagcgcgaccgtgacttcaagggtggcggcaagaaccgcggcggttcc
aagcggccggatggtgactttgagacgtaccggttggacgtcggcaagcgccagaatgtc
cgccctggtgccatcgtcggtgctatcgccaacgaaggtggcctgtctgccaaggacttc
gggcgcatcaccattgcggtggggcacacgctcgtggatctgccgaagaacatggacccg
gctgtgcttgaccgcctgaaggatacccggatttctgggcagctcatcaagattcagaag
gataccggtcgcccgcctcgccgtgatggcggcggcggtggccgcaagcacgttggtcgc
ttccgcgactaa
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