KEGG   Chroicocephalus ridibundus (black-headed gull): 134508071
Entry
134508071         CDS       T10910                                 
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04120  Ubiquitin mediated proteolysis
crid04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:crid00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    134508071 (SYVN1)
   04120 Ubiquitin mediated proteolysis
    134508071 (SYVN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:crid04121]
    134508071 (SYVN1)
Enzymes [BR:crid01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     134508071 (SYVN1)
Ubiquitin system [BR:crid04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    134508071 (SYVN1)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4 zf-rbx1 zf-C3HC4_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_16 zf-RING_11 zf-RING_5 zf-RING-like zf-ANAPC11 zf-HC5HC2H zf-C3H2C3 zf-Nse Endonuclease_7 Prok-RING_4
Other DBs
NCBI-GeneID: 134508071
NCBI-ProteinID: XP_063175230
LinkDB
Position
31:329951..339535
AA seq 606 aa
MLCTAVVMAGSLALTTAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHFRIVSLMFLLGILDFLFVNHAYHSILTRGASVQLVFGFEYAI
LMTMVLTIFIKYVLHSIDLQNENPWDSKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQTPPEPPEQAPQPPQTPQVP
QPPNFPQGILPPFPPGMFPFWPPVGPFPPVPGVQPPNSTENTAPSSSTASASRPSDAANA
GSEAAAAGTVPAFPFPPPWMGMPWPPLFGFPPMPVPPAGFAGLTEEELRAMEGHDRQNLE
ARLQCLQNIHTLLDAAMVQINQYLTVLATIGSPRPAAPRPPSAPAEEPTTLRSPGSPSAP
ATAGTAAGSTAATDPTVPAGAEGFTAEEEEEEDDGGEGSSSLDEPDTAELRRRRLQKLAS
PPPASH
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgctctgcacggcggtggtgatggcagggagcctggcgctgacgacggcggtggtggct
cacgcctattacctgaagcaccagttctatcccaccgtggtttatcttaccaaatccagc
cccagcatggctgttctctacatccaggcttttgtgttggtttttctcctgggtaaattt
atgggcaaggtgtttttcgggcagctgcgggcagcggagatggagcacctactggagcgg
tcgtggtacgccgtgacggagacctgcctggcctttaccgtcttcagggacgacttcagc
cctcgctttgttgcccttttcaccctcctcctcttcctcaagtgcttccactggttggct
gaagaccgggtggactttatggaaaggagccccaacatctcctggcttttccacttccgt
atcgtctccctgatgttcctcctgggaatcctggatttcctcttcgttaaccacgcgtac
cacagcattctcacgcgaggagcctcagtccagctcgtcttcggctttgagtacgccatc
ctcatgaccatggtgctcaccatcttcatcaagtacgttctgcactccatcgacctgcag
aatgagaacccttgggacagcaaagccgtctacatgctgtacacggagctcttcacgggc
ttcatcaaagtcctcctctacatggccttcatgaccatcatgatcaaagtccacaccttc
ccgctcttcgccatccgccccatgtacctggcgatgaggcagtttaagaaagcggtgacg
gatgccatcatgtctcgccgggccatccgcaacatgaacacactctaccctgacgccacg
ccggaagagctgcaggccatggacaacgtctgcatcatctgccgcgaggagatggtgacg
ggcgccaagcgtctgccttgcaaccacatcttccacaccagctgcctgcggtcgtggttc
cagcgccagcagacgtgtcccacctgccgcatggacgttctccgggcttccctcccggca
cagacgcctcccgagccgccggagcaagccccacagccgccccagaccccccaagtcccc
cagccccccaactttccccaggggatccttccccccttccccccaggaatgtttcccttc
tggccgccggttggtcccttcccgccagttcctggtgttcaaccgcccaacagcaccgaa
aacaccgcgccgagctccagcaccgcttcagcttccaggcccagtgatgctgccaacgcc
ggatcggaagctgccgctgcggggacggtgccggcgtttcctttccccccgccgtggatg
ggaatgccgtggccgcccctctttggcttccccccgatgccggtgccgccggctggcttt
gccggtttgacagaggaagaacttcgagccatggaaggccacgatcggcaaaacctggaa
gcgcggttacagtgtctccagaacatccacaccctcctggacgctgccatggtgcagatc
aaccaatacctgacggtcctggccaccatcgggtctccccgacccgccgctccccggccc
ccttccgcccctgctgaggagcccaccaccctgcgctcacccggcagcccctcggcaccg
gcgactgccggcaccgccgccggctccaccgcggctaccgatcccaccgtgccagcgggc
gccgaaggcttcaccgccgaggaggaagaggaggaagacgatggtggcgaaggctcatcc
tcgctggatgaacccgacacggcggagcttcgccgccgcaggctacagaaactggcgtcg
ccgccgccagcctcgcactga

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