Chroicocephalus ridibundus (black-headed gull): 134508090
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Entry
134508090 CDS
T10910
Symbol
NXF1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03008
Ribosome biogenesis in eukaryotes
crid03013
Nucleocytoplasmic transport
crid03015
mRNA surveillance pathway
crid05164
Influenza A
crid05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134508090 (NXF1)
03015 mRNA surveillance pathway
134508090 (NXF1)
03008 Ribosome biogenesis in eukaryotes
134508090 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
134508090 (NXF1)
05168 Herpes simplex virus 1 infection
134508090 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134508090 (NXF1)
03009 Ribosome biogenesis [BR:
crid03009
]
134508090 (NXF1)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134508090 (NXF1)
mRNA cycle factors
Stress granule specific factors
134508090 (NXF1)
Ribosome biogenesis [BR:
crid03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
134508090 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
134508090
NCBI-ProteinID:
XP_063175263
LinkDB
All DBs
Position
31:complement(121037..130245)
Genome browser
AA seq
615 aa
AA seq
DB search
MAEEGKGGYSEHDDRVGGRSFSGRRKKGRGPFRGKMYSEMNHRSRSRGGPGLRARLEEDD
GDVPMSEAHDGPRSRYLPYGPRPNRSTNIHITVKRDLPTPERSGGTSRDGGRRNWFKITI
PYGKKYDKSWLLSSIQNLCSVPFTPVEFHYDHNRAQFYVEDATTASALKQVSRKITDRDN
YKVVIIINSSAPPQSLQNELKPEEIEQLKLCMSKRYDGSQRALDLKSLRVDPDLVSQSID
VVLNQRSCMLVVLRIIEDNIPELQSLNLSSNKLYRLDDLSELAQKAAGLKILDLSRNELK
SDRELDKVKGLKLEELWLDGNPLCDAFRDQSTYISSVRERFPKLLRLDGHELPPPIAFDV
EAPTTLPPCKGSYFASDDLKVLVLRFLQQYYSIYDSSDRQGLLDAYHDGACCSLSIPFGP
HNQPRNSLNEYFKDSRNVKKLKDPTMRFKLLKHTRLNVVAFLNELPKTQHDINSFVVDIC
AQTNTLLCFAVHGIFKEVDGKSRDSVRAFTRMFIAVPAGNTGLCIVNDELFVRNATTEEI
RKAFLMPAPTPSSSPVPTLSAEQQEMLAAFSMQSGMNLEWSQKCLQDNDWDYGRAGQVFT
QLKLEGKIPEVAFLK
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaggggaaagggggttacagcgagcacgatgaccgcgtgggcgggcgaagc
ttctcgggccgcaggaagaaaggccgcggcccgttccggggaaagatgtacagcgaaatg
aaccatcgttcccggagccgcggcggccctggtctccgcgcccggctggaggaggacgac
ggtgacgtccccatgagcgaggcccacgacgggccccgcagccgatatttgccctacggg
ccgcggcccaaccgctcgaccaacatccacatcacagtcaaacgagatcttcccaccccg
gagcgaagtggcggcaccagtcgcgatggcgggcgcaggaactggttcaagatcaccatc
ccctacggaaagaaatacgacaagtcctggctgctgagctccatccagaacctctgcagc
gtccccttcacccccgtcgagttccactacgaccacaaccgggcccagttctacgtggag
gacgccaccaccgccagcgccctcaaacaggtctcccggaagatcaccgacagggataat
tataaggtggtgataattatcaactcgtcagctccgcctcagtccctgcagaacgagctg
aaaccggaggagattgagcaactgaagctctgcatgagcaagaggtacgacggttcgcag
cgggcgttggacctcaagagcctccgcgtcgacccggatttggtgtcgcagagcatcgac
gtggtgctgaaccagcggagctgcatgctggtggtgctgcgcatcatcgaggacaacatc
cccgagctccagtctctcaacctgagcagcaacaagctctaccgcctggacgacctgtcc
gagctggcgcaaaaagccgccggcctcaagatcctcgacctttctcgcaacgagctgaaa
tccgaccgggaactggacaaggtgaaggggcttaaactggaggagctttggctcgatgga
aaccctctttgcgacgctttccgggaccagtccacctacatcagctccgtcagagagcga
ttccccaagctgctgcgcctggacggccacgagctccctccacccattgccttcgacgtg
gaggcccccaccacgctgcccccctgcaagggcagctacttcgcctcggacgacctgaag
gttttggtgctgcggttcttacagcagtattactccatttatgactccagcgacaggcag
gggctgctggacgcctaccacgacggagcctgctgctccctcagcatccccttcgggccc
cacaaccaaccccggaacagcctcaacgagtattttaaggacagcagaaacgtgaagaag
ctgaaagaccccaccatgcgcttcaagctgctcaaacacacgcggctcaacgtggtggcc
ttcctcaacgagctgcccaagacacagcacgacatcaactccttcgtggtggacatctgc
gcccagacgaacacgctgctctgcttcgctgtccatgggatcttcaaggaagtggatggc
aaatcccgcgactctgtgcgcgccttcacacggatgttcatcgccgtcccggccggcaac
accgggctctgcatcgttaacgacgagctcttcgttaggaacgccaccaccgaggagatc
cgcaaggccttcctcatgccggcccccaccccctcctccagccccgtccccaccctctcg
gccgagcagcaggagatgttggccgccttctccatgcagtcgggcatgaacctcgagtgg
tcccaaaagtgcctccaggacaacgactgggactacggacgggccgggcaggtcttcacc
cagctcaagctggaagggaagatcccggaggtggcgtttctcaagtga
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