Chroicocephalus ridibundus (black-headed gull): 134508209
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Entry
134508209 CDS
T10910
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crid03021
]
134508209 (CHD1)
03036 Chromosome and associated proteins [BR:
crid03036
]
134508209 (CHD1)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
134508209 (CHD1)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
134508209 (CHD1)
SLIK complex
134508209 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
134508209
NCBI-ProteinID:
XP_063175525
LinkDB
All DBs
Position
Z:28542703..28607305
Genome browser
AA seq
1812 aa
AA seq
DB search
MNGHSDEESIRNSSAESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
QSESESDTSREKKQIQAKPPKVDGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSE
EDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDGEKSSCEESESDY
EPKNKVKSRKPPTRIKSKSGKKGAVLKKRQLDSSEDEEEEEDDDDDDYDKRGSRRQATVN
ISYKEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEA
DGDPNAGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQET
KRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYS
ECSWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESL
ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL
STLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKD
KSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF
IMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMS
ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEA
LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK
GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH
RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTILHTGSTPSSSTP
FNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQF
KVANFSNMDEDDIELEPERNSRNWEEIIPELQRRRIEEEERQKELEEIYMLPRMRNCAKQ
ISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYK
KFGGPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKG
PTFRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDS
NLLIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLAR
KEAQRLAGAGNSKRRKARTKKNKVTKAAKIKEEIKSDSSPQPSEKSDEDDDEDNKDEIVS
VKQPHKKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKD
IKEKRENKVKESTQKEKEVKEEKVNEIKSENKEKTKKMPLLDTPVHITATSEPVPILEES
EELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYT
NPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQQNDQNISSNVNTHVIRN
PDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKD
HRDWDHYKQDSRYYSDSKHRKLDDYRSRDHRSNLEGSLKDSRAHSDHRSHSDHRIHSDHR
SSSEYSHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHK
STPEHTWSSRKT
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagcataagaaacagtagtgcagagtcaagccaatca
gatgatgattccgggtcagcatcaggttctggatctggttcaagctctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcaggcact
cagtcagaatcagagtctgacacgtctagagagaagaaacaaattcaagcaaaaccacca
aaagttgatggatccgagttttggaagtctagtccaagtatacttgctgtgcaaagatca
gcagtgctaaagaagcaacagcaacaacaaaaggcagcctcatcagacagtggctcagaa
gaggactcatcaagtagtgaagattctgcagatgactcatccagtgaaaccaagaagaaa
aaacataaagatgaagactggcaaatgtcgggatcagggtcagtatcgggaactggttcc
gattctgaatcagaggaagatggggagaaaagcagttgcgaagagagcgaatctgactat
gagccaaaaaacaaggttaaaagccgtaaacctccaaccagaattaagtcaaaaagtggg
aaaaagggtgcagtactgaaaaagaggcagcttgattcatcagaggatgaggaagaggag
gaggatgatgatgatgatgattatgataagagaggatctcgtcgccaggcaacggtcaac
attagttacaaagaagctgaagaaaccaagacagattctgatgatttgcttgaagtttgt
ggagaagatgtcccacaacctgaagaagatgaatttgaaactatagagaagttcatggat
agtcgagttggccgaaaaggagccacgggtgctgcaaccaccatctatgcagttgaggca
gatggtgacccaaatgctgggtttgaaaagtcaaaggagccaggagaaatacaatatctt
attaaatggaaaggctggtcacacatccataacacttgggaaactgaggaaacgctcaag
caacaaaatgttaaaggaatgaagaaactggacaactataagaaaaaggatcaggaaaca
aaacgatggctgaaaaatgcttctccagaagatgtggaatattacaactgccagcaggag
cttacagatgatctgcataaacagtaccagatagtggaaagaataattgctcattcaaat
cagaaatcagcggctggttatccagactactactgtaagtggcagggtctgccttattca
gaatgtagctgggaagatggtgcgctcattgccaaaaagtttcaggcacgcattgacgag
tactttagcagaaatcaatccaagaccactccctttaaggactgcaaggttttaaagcag
aggccaaggtttgttgcactaaagaaacaaccatcatacattggaggacatgaaagttta
gagttaagagattatcagctaaatggattgaattggcttgctcactcctggtgcaaaggg
aatagctgtattctcgcagatgaaatgggcctgggtaaaacaatacaaacaatttctttt
ctgaactacctgtttcacgaacatcaattgtatggccctttcttgctggttgtgccactt
tctaccttgacatcttggcaaagagagattcaaacttgggctcctcagatgaatgctgta
gtttacttaggagatataactagcagaaatatgataagaactcatgaatggatgcatcca
cagaccaaacgattaaaatttaacatacttctaacaacatacgaaattttgctaaaggat
aagtcattccttggtggtctgaattgggcattcataggagttgacgaagctcatcgttta
aaaaatgatgactctcttctgtacaagactttaattgactttaagtctaaccatcgtctt
cttattactggaacgcctctgcaaaactccctcaaagagctttggtctttgttgcacttc
atcatgccagaaaagttttcctcctgggaagattttgaagaggagcatggcaaagggaga
gagtatggttatgcaagtcttcacaaagaacttgaaccgtttctactgagaagagttaaa
aaagatgtagaaaagtctttacctgctaaagttgagcaaattctgagaatggaaatgagt
gcattgcagaagcaatattataagtggattttaaccaggaattataaagccctcagtaaa
ggttcaaaaggcagtacctcaggctttttgaacataatgatggaactcaagaagtgttgt
aaccattgctacctcattaaaccaccagatgataatgaattctataataaacaggaggcc
ttacagcatttaatacgtagcagcgggaaactaatccttcttgacaagctactgattcgt
ctgcgagaacgtggcaacagagttctgattttctcacagatggtgaggatgctggacatc
ctagcagaatatctgaagtatcgtcagtttccctttcagagacttgatggatcaataaaa
ggagaattgaggaaacaagcactggatcattttaatgcagaaggatcagaggacttctgc
tttttactgtctaccagagctgggggattaggcatcaacttggcatctgctgacactgta
gttatatttgattctgactggaatccacagaatgatctacaagcacaggctagagcgcat
aggattggacagaagaaacaggttaatatttatcgactcgtcacaaaaggatctgtagaa
gaagatattcttgaaagagccaagaaaaagatggtgttagatcatttagtaattcagaga
atggacactacagggaaaaccatactacatacaggctctactccttcaagctcaacacct
tttaataaggaggagttatcagcaattttaaagtttggtgctgaggaactttttaaagaa
cctgaaggggaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggca
gaaactcgggaaaatgagccaggtccattaactgtaggagatgagttgctttcacagttc
aaggtggccaacttttccaacatggatgaagatgatattgagttggaaccagaaagaaat
tcaagaaattgggaagaaataattccggaactccagcggcgtagaatagaagaggaggaa
agacaaaaagaacttgaagaaatatatatgctcccaaggatgaggaactgtgcaaaacag
atcagctttaatggaagtgaagggaggcgcagtaggagcagaagatactctggatctgat
agtgactccatctcagaaagaaaacggccgaaaaaacgtggaagaccacgaactattcct
cgagaaaatattaaaggatttagtgatgcagagatcaggcggtttatcaagagttacaag
aaatttggtggccctcttgaaaggttagatgctgtagctagagatgctgagctagttgat
aaatcagagacagatctcagacgtttgggagagcttgtacataatggatgcattaaagct
ttaaaggacaattcatctggacaagaaagagcaggaggtagacttgggaaagttaaaggc
ccaacattccgaatctcaggagtgcaggtgaatgcaaagctagtcatctctcatgaagaa
gagttggcaccattgcacaaatccattccttcagatccagaagaaagaaaaagatacgtc
atcccatgccacaccaaggctgctcattttgatatagactggggtaaggaagatgattcc
aatctgttaataggcatctatgaatatggttatggcagctgggaaatgataaaaatggat
cctgatctcagtttgacacagaagattttgcctgatgatccagataagaaaccccaggcg
aagcagttacaaactcgtgcagactacctcattaaattactgaataaagaccttgcaagg
aaggaagcacaaaggcttgctggtgcaggcaactcaaagaggaggaaagcaagaactaag
aagaataaagtgacaaaggctgcaaaaataaaagaagaaataaaaagtgattcttcaccg
caaccctcagaaaaatctgatgaagatgatgatgaggataacaaggatgagattgtttca
gtgaaacaaccacataaaaaaattaaagcagaaaaagaaaatgaagaaaagcctgagcca
gatattggtataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataag
agggatttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaagat
attaaagaaaagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaag
gaagagaaggtaaatgaaatcaaatctgaaaataaagaaaaaactaaaaaaatgccattg
ttggatactccagttcatattactgcaaccagtgaaccagttcctatattggaagaatca
gaagaactggatcagaaaacttttagcgtgtgcaaggaaagaatgaggcctgtcaaagca
gcattgaaacagctggaccgaccagagaagggcctttctgaaagagagcagctggaacat
actagacagtgtcttatcaaaattggggatcacattactgaatgtctaaaggagtacaca
aatcctgaacaaattaaacagtggagaaaaaacttgtggatttttgtctctaagtttaca
gaatttgatgccagaaagctgcacaaactgtataaacatgcaatcaaaaaacgccaagaa
tctcagcaacaaaatgaccagaatattagcagcaatgtgaatacacacgtaattagaaat
ccagatgtggaaaggctgaaggagaatacaaaccatgatgacagtagcagggacagttat
tcttctgatagacatttgtcacaataccacgatcatcataaagacaggcatcagggagat
gcttacaagaaaagtgactctaggaaaaggccctattcagccttcagcaatggaaaagat
cacagagactgggatcactacaaacaagacagcagatactacagtgacagtaaacataga
aagttagatgactacaggagcagagaccacaggtcaaacctggaaggaagtttaaaagac
agccgggctcattcagaccaccgttcccattcagaccacaggatacattcagatcatcgt
tcctcttcagagtacagccatcataaatcttctagggattataggtaccactcagactgg
caaatggaccacagagcttcaggtagtggcccaaggtcaccattagatcagaggtctcct
tatggttcaagatctcccttaggacacagatctccatttgaacactcatcagatcacaaa
agtacacctgaacatacatggagtagccggaaaacataa
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