Chroicocephalus ridibundus (black-headed gull): 134508296
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Entry
134508296 CDS
T10910
Symbol
TNPO1
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134508296 (TNPO1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134508296 (TNPO1)
03009 Ribosome biogenesis [BR:
crid03009
]
134508296 (TNPO1)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134508296 (TNPO1)
Ribosome biogenesis [BR:
crid03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
134508296 (TNPO1)
Pre-60S particles
134508296 (TNPO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
IBN_N
TOR1L1_N
Vac14_Fab1_bd
HEAT_EF3_N
Cnd1
TPR_IPO5
HEAT_MROH2B_C
TPR_DNAAF5
PDS5
Adaptin_N
CEP104-like_TOG
MMS19_C
HEAT_GCN1_C
INTS7_N
HEAT_Maestro
HEAT_GCN1_C_2
Dopey_N
UNC45-central
RTP1_C1
VPS15-like_hel
TPR_TTI1_C
ARM_TBCD
HEAT_DAAF5
DUF3689
Motif
Other DBs
NCBI-GeneID:
134508296
NCBI-ProteinID:
XP_063175761
LinkDB
All DBs
Position
Z:58477605..58552757
Genome browser
AA seq
890 aa
AA seq
DB search
MEYEWKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV
MLLEVRMDRLLPHMISIVEYMLQRTQDHDENVALEACEFWLTLAEQPICKDVLCRHLTKL
IPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDIRPRFHRSRTVAQQHEEDGIEDDDDD
DDELDDDDAISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVHLVQKTLAQAMLHNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVVQDFIFFCDAVA
SWISPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgagtggaagcccgatgagcaagggcttcagcagatcctgcagctgctcaag
gagtcacagtccccggacaccaccacgcagagagccgtgcaacaaaaactagaacaactc
aatcagtatccagatttcaacaactacctgatttttgttcttacgaagttgaagtctgaa
gatgaaccgacacgttccttgagtggtctcatcttgaagaataatgtaaaagcacatttt
cacaactttcccaatggggtaactgacttcattaaaagtgaatgtctgaacaacattggt
gattcctcccccttaattagagctactgtaggcattctgataacaaccattgcctcaaaa
ggggaattacagaattggcctgaactcttaccaaagctttgcagcctgttggattctgaa
gattacaatacctgtgagggtgcttttggcgctcttcagaagatatgtgaagattctgct
gaaattttagatagtgatgtgttggaccgaccactcaatatcatgatacctaagttcttg
cagttcttcaagcacagcagtccaaaaataagatctcatgctgttgcatgcgtcaatcaa
tttatcatcagcagaactcaagctcttatgttgcacatagactcttttattgagaatctt
tttgcactggctggtgatgaggaacctgaagtacgcaaaaatgtgtgccgtgctctggta
atgttgctggaagttcgaatggatcgcctgcttcctcatatgattagtatagttgagtac
atgcttcaaaggacccaggaccatgacgaaaatgtggccttggaggcttgtgagttttgg
ctgactttggctgaacagccaatttgtaaagatgtattatgtcgtcatcttactaagctg
atacctgtgctggtaaatggtatgaaatattcagagatcgatattattcttttgaagggg
gatgttgaagaagacgaagctattccagatagtgaacaggacataagacctcgttttcat
cgttcgcggacagtggctcagcaacatgaggaagatggtattgaagatgatgacgatgat
gacgatgaacttgatgatgatgatgctatttctgactggaatttaagaaaatgttctgct
gctgctctggatgtcctagccaatgtatttcgtgatgaacttctgccacacatcttgccc
cttttgaaggaattgctcttccatcccgagtgggtagttaaagaatctggtatccttgtt
cttggagcaattgctgaaggctgcatgcagggtatgattccatatcttcctgagctgatc
cctcaccttattcagtgcctgtctgacaaaaaggctctcgtgcgctccattacatgctgg
actcttagtcgctatgcacactgggtagttagtcaacccccagacacatacttgaagcca
ttaatgactgagttgctaaagcgtatcctggatagcaacaagagagtacaagaagctgcc
tgcagtgcctttgctactctagaagaggaggcttgtacagagcttgttccttatcttgca
tatatacttgacactttggtcttcgcatttagtaaataccagcataaaaacctgctcatt
ctttatgatgctataggtactctagcagattctgtaggacatcatctaaataaacctgaa
tatattcagatgctaatgcctccattaatccagaagtggaacatgttgaaggatgaagat
aaagatctcttccctttattagagtgcctgtcgtcagttgctactgccttgcaatctggc
tttcttccatactgtgaacctgtgtaccagcgttgtgtacatctggtgcagaagaccctt
gcacaagccatgttgcataatgctcagccagaccaatatgaagctccggataaagatttc
atgattgtggctcttgatttactcagtggtttagctgaaggacttggaggcaacattgaa
cagctagtggctcgcagcaatatcctgacgttaatgtaccaatgcatgcaggataaaatg
cccgaggtacggcagagttcttttgcattgttaggtgatctgacaaaggcgtgttttcag
catgttaagccttgcatcgctgatttcatgccaattttgggaaccaacctaaaccccgaa
ttcatttctgtgtgtaacaatgccacctgggcaattggagaaatctccatccaaatgggt
atagagatgcagccttatattccaatggtgttgcaccagcttgtagaaataattaacaga
cccaacacaccaaagacgttgttagagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgcacctct
ctgcgaaacataagagacaatgaggaaaaggattcagcgttccgtgggatatgtaccatg
atctcggtcaaccccagcggagtagtccaagactttatttttttttgtgatgctgttgca
tcgtggattagcccaaaagatgatctccgagacatgttctgtaagattcttcatggattt
aaaaatcaagttggggatgagaattggaggcgtttctctgaccagtttcctcttccctta
aaagagcgccttgcagcttactatggagtttaa
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integrated database retrieval system
