| Entry |
|
|---|
| Symbol |
VPS13A
|
|---|
| Name |
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
|
|---|
| KO |
| K19525 | vacuolar protein sorting-associated protein 13A/C |
|
|---|
| Organism |
crid Chroicocephalus ridibundus (black-headed gull)
|
|---|
| Brite |
KEGG Orthology (KO) [BR:crid00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:crid04131]
134508418 (VPS13A)
Membrane trafficking [BR:crid04131]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
134508418 (VPS13A)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
Z:complement(45656578..45764914)
|
|---|
| AA seq |
3208 aa
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIED
AKQKIADQDKEKEEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHRGCEESLVNLKQGVA
SHNLIPEGYDFVFRPISAKAKLLMNPRSDVDFSSPKMDLDVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKTWWKYVIYGILEVNVQPKLQMWSWEHIRHHRK
QVKNYKEMYKTKITSKKPNEEILKLLEEFEKALDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWSWSGEKKDEQKQEVKGSSLEELMTCEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVNLLSMSISLRENKQTPELVVFALTGLSTVFTQRPGAQAIRFETKITS
LEVTGMSREKCTPCLLSSRTVYSDESTSLLSIMFETNPLDEKADQRLRIESQPLEIVYDA
MTINSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYERTSNLLLLDLGSLKMKSKSRSDLSELKVGQSTIEDIMSRAYDSFDVQLSS
IQLLYSKHDENWQEARKLKCSSQHILQPLDVKVEFSRAMVVTDARMPKFKLSGQLPLLSI
QISDQKLTSILELIDSIPKPESAPATSSPPKITEAAISPVLSAPHLSQGVFPVLDLHSFA
ESESEEEFYDALSSPVEDMPFFEAPSGSLKRASSTRRKKLRKQESLKNMTEFQLRFEVAE
VLIKLCRLTGNTETPVLQLDVVGLGTELKLRTFDMTANAFLREVCLLCPEYMDDNEKPVY
IITTLDNVEDDLLTLEYIKADINGPELKTAYENVLQKIKVNFSSLDIHLHTEALLNAMNY
LNNLLPKQETKVAEEPVHEKTEEKKDVLKKLTSKKSKYEDVIDLNICADLSCLRIFIREK
KHRIAEIHIEGLDSQVIMKKTAMEVTAKLKNIIIVDSDETALYKKALYITGKEVFNFRMI
SYVNATDGIAYTNMDVVDNRIYLTVGCIQVVFVNKFVSSILAFINNFQAAKEALTEATVQ
AAEKAATGVKELAERSSRLALDINIKAPVVIVPQSAMSANVLVADLGLITVKNQFFIAKT
KTRYNLPPVVDSMTVKLSELKLYRSCYEQGSLQTEVQLLQPLNLEVAVERNLAAAWYNEV
PDIEISGRLKPMNLILSQEDITTILRTLNENIGGSSGASTSLPEPKDTTSHGSDMHSTSQ
HSAGVTVVTSAVVELHSPMKIKTTLKLDFRFDSLTLVLYSPNSKQVTNLDQRDELLKLAE
FKLVLMSAAVKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDISY
KQGRDGTILDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSLPLKEQAPVQP
VSTMEMNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYSMTAAVKEIQMKAC
PFLPEERKGNITTVLQPCDFFFEMKQSGTNPQTADLTIKSLTIKVSPIIINTVITITSGL
YQTAETTEEEISQIPPDLWNKKDIKNLKMWFLEESNANEDTNPTAELVPTGESLKMNVES
VLLTLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLRSHLELEVHYFNEMFGVWEPLLEP
LEVEKTDLFKPWILEIKMKKKAKKALVESDAEEENYKVPEYKTVINVSSKDQLNITLSKC
GLQMLSNLGTAFAEAASQTSDIFKKDRAPFVIINSLGLPITVSPSDSFSVLNVEFGAKIF
HLRDGENLNMEFVRTKNESDQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCIYRV
RHEESGVERSIVCQIDTVEGSKMITIRSPIQIRNHFSIPLNIFEEGRCLGAASPENEFNI
PLSSYRSVLSLQPLANESGVDGEYDMCEGITFEEILKNVDSLLQRKCQSVRSTNHSLIIN
IVPVKDTVTSSSCAEDQWDFPYVVHLWPSVLLRNLLPYHITYSVEGNGNKYDTLQEGCSA
QIHNAVLDQTKLDLQLLNYLDQNWKSEYHIKSNLPEISFTTFYCITELDKTELDIAVHVT
YTTGQMVIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFFQNNKVQL
MVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINISSFNITRIVTFTPFFMISNRS
KYTLEVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPENDANKLLVRVENSDLPPKK
INFDKQENCLLLHLDNKLGGITVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYG
QSSLSELEDCLQPNKAVLYTWADPAGSRKLKWKCGNRTEEVTPKEDKMEILRLDCRKVVY
LVSFFEGLQRIVLITDDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNSTKQEVSYI
GITSSDVVWETKPKKKSRWRPMSVKQTDKLEQEFKDYSELTPSENKIIELESNVLVCLTP
NGMNMKIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYP
IKPPKSITLDSAPKPFTDVSIVMRTAGQSQISHIKYFKVLIQEMDLRLDLGFLYALVEFF
TQTEVPSDQELELFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGE
DSNKEERKNELIPLQSLNLLLKSIGATLTDVQDVVFKLAFFELNYHFCTTQQLQSAVVRH
YSKQAIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLK
ALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGL
VSGFVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKV
ADSSEDVISLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDL
LMVTKSGVLFVTKGTFGQLTCEWQYSYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFG
KIINFKSPEDAKWILSKLEEVRENQPKL |
|---|
| NT seq |
9627 nt +upstreamnt +downstreamnt
atggtgtttgagtcgctggtcgtggacgtcctgaaccgtttcctcggcgactacgtggtg
aacctagacagctcccagctgaagctgggcatctggggaggagctgtagcactgaagaat
cttgaaataaaagagaatgcactgagtcagctggatgtgccatttaaagttaaagcagga
catattggtcaacttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttatttgctaattgtgcccacagccagcataaaatatgatgct
gaaaaagaagccaggcagcttctggaagcaagacaaagggaattgcaaaggattgaggac
gcaaagcagaaaatagctgaccaagataaagaaaaagaagagaaacaggacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaggtgaaaatttccaacatccatatt
cgctatgaagatgatatcacaaatcggaataaccccttgtcatttgggatttcacttcaa
aatctaagtttgcagacctcagataaaaattggaatccatgtttacatgatgaaactgcc
aagttgttctacaagcttgtacgactggataacctttttgcttactggaatgtgaaatca
gagatgttctaccatcgtggttgtgaggaatcattggttaacttaaaacagggagttgcc
agccacaatctgattccagaaggttatgattttgtattccgcccaatttcagctaaagcc
aaactccttatgaatcctcgatctgatgttgacttttcgtcaccgaaaatggatttagat
gtaaatttacaggatataactgttgaattcaataagccacagtacttcagtgttatggag
cttctggagtctattgatatgatgactcgaaatctgccatataggaagtacagacctgat
gttccattgcacaacaatgccaagacatggtggaaatatgttatttatggcatccttgaa
gtaaacgttcaacctaagctccaaatgtggtcatgggaacatattcggcaccataggaaa
caagtgaagaactacaaagagatgtataaaacaaagataacatcaaaaaaacctaatgaa
gaaatcttaaaattgttggaggaatttgaaaaggctttggatatttttaacatcactcta
gcaaggcaacaagcagaagttgaggcaactaaggctggattaaaaatctacagaccagga
gtaaaacaagacgatgaaaattctggtggctggtttagttggatatggagctggtcaggt
gaaaaaaaggatgaacaaaaacaagaagtgaagggttcaagtcttgaagagctgatgacg
tgtgaagagaaggctaaactttatgcagcaattggatatagtgaaacagccgtggatcca
acccttccaaaatcatatgaagccatgaagttctctgtgaacttactaagcatgtctata
tcactaagagaaaacaagcaaactcctgagctggtagtatttgcgttaactggcctgagt
acagtgtttacccaacgaccaggtgcacaagcaataagatttgaaacaaaaattacctca
cttgaagttacaggcatgtcccgagaaaagtgtacaccctgtctcctgtcttctcgaaca
gtctattcggacgagagtacctcactcttaagcataatgtttgagactaatcctttggat
gagaaagcagaccagaggcttagaattgaatcacagccactggaaatagtatatgatgca
atgacaataaacagcttagtggatttcttcaggcctccaaaagatgtacatttagagcaa
ttgacatcagcaactctgatgaagcttgaagagttccgtgaaaaaacatcaacaggtttg
ttgtatgttattgaaacccagaaagttcttgacctcaaaattaacctcatggcttcatac
atcattgttccacaaaaaggattctatgagcgtacgtcaaatttactgcttctggatctt
ggtagtcttaagatgaaaagcaaaagccgttctgatttatcagaactcaaagtaggacaa
agcaccattgaagatataatgtcaagagcttatgacagttttgatgtacagctcagcagt
atacagttactgtacagcaaacatgatgagaactggcaagaggctcggaagctgaagtgt
tcatctcaacatatcttgcagcccttggatgtaaaagtggaatttagtagggctatggtt
gttacagatgcaagaatgcccaagttcaaactgtctggacagctgcctttactttctatc
caaatatcagaccagaagctgacaagcatcttggagctaattgatagcattcctaagcca
gaaagtgctcctgctaccagttctcctccaaaaataactgaggctgctatatcccctgtg
ctctcagcaccacatttatcacaaggtgtgtttcctgttttggatcttcattcatttgct
gagtcagaatcagaagaagaattttatgacgctctaagcagtcctgtggaagacatgcca
ttttttgaagccccatctggttccctcaagcgagctagcagtacaaggcgaaaaaaacta
cgtaaacaggaatctttgaaaaatatgacagaattccagctaaggtttgaagtagctgag
gtcttaattaaattatgccgacttactggtaatacagaaacacctgtgctgcagcttgat
gttgtaggcttaggcactgaacttaaattaagaacatttgacatgactgcaaatgctttc
cttcgtgaagtttgtctgctatgcccagagtatatggatgataatgagaagccggtttac
ataattacaactttggataatgtagaagatgatcttcttactctggagtacataaaggct
gatattaacggaccagaactgaaaactgcctatgagaatgttctgcagaaaattaaggtg
aacttttcatctctagatattcatttgcatactgaagctctgctgaatgctatgaactat
ctgaataatcttctacccaaacaagaaactaaagtcgcagaagaaccagtccatgaaaaa
acagaggagaagaaggatgttcttaagaaattaacatcaaaaaaatcgaagtatgaagat
gttatcgacctcaatatctgtgcggatttatcctgtttacgtatatttattagagagaaa
aaacatagaatagctgaaattcacattgaaggtctggacagccaagtgatcatgaagaaa
acagcaatggaagtgactgcaaaattaaagaacatcattattgtggattctgatgagaca
gcattgtataaaaaggctctttacatcacaggaaaagaagtcttcaacttcagaatgata
tcatatgtgaatgctacagatggcattgcgtatacaaatatggatgttgttgacaatcgt
atttacctaactgttgggtgtattcaagtagtttttgtcaacaagtttgtttcatctatt
ttggcttttataaataactttcaagctgccaaggaagctcttactgaggcaactgttcaa
gcagcagagaaagcagcaacaggtgtaaaagagctagcagagcgtagttcccgtttggca
ctagatatcaatattaaagcacctgttgtgatagttccacagtcagcaatgtctgcgaat
gtgctggtggctgatctgggtctgatcactgtgaagaaccaattctttattgctaaaaca
aaaacacggtataatctcccacctgttgttgactctatgacagtgaaattgagtgaacta
aagttatacagatcgtgctatgagcagggttcattgcaaactgaagtacagttgctgcag
ccactcaatctggaagtagctgttgaacgaaatttagctgctgcatggtataacgaagtt
cctgatattgaaatatctggacgactcaagcctatgaatctaattctcagtcaggaagat
attaccacaatattgaggacactaaatgaaaatataggtggaagctctggtgcatcaaca
tctttaccagaacccaaagatacgactagccatggtagtgatatgcatagtacttcacag
cactctgcaggtgtgactgttgtgacgtcagctgtggtggaattacattcacctatgaaa
ataaaaacaacgctaaaactggacttcagattcgactccctgactttagtactgtatagt
ccaaattcaaaacaggttacaaatttggatcagagagatgaacttttgaagcttgcagag
tttaagttagttttgatgtcagctgctgtcaaaatgttatcagatggttcaatgaatgct
tcagtcaagctggcaaattgtacattagatgataaaagacaatcaatccagaaggctaca
ccaaggatggtggaaatgaaacatggatttgaaaagaaagttatggtggatataagctat
aaacaggggagagatggcactattcttgatgtgattgttcaagagatatacctttgtgca
agcatggagtttctacttactgtcgcagatatattccttaaggctaatgcagaaagtgct
gctgcacagagaaatctcaaacagtcattacctttaaaggagcaagcacctgtgcagcct
gtatctacaatggaaatgaacattgttgttaaaaatccagagatcgtgtttgtggctgat
ttaacaagaagtgatgctcctgcgttggtggttacaacgcagtgtgaggtcttcattaaa
aatagccctgaaagatatagcatgacagctgctgttaaagagattcaaatgaaagcatgt
ccatttctaccagaagaaaggaaagggaatattactacggtattacagccttgtgacttc
ttctttgaaatgaaacagtcaggtactaatccacagacagctgatctgacgattaaatct
ctaacaataaaagtatcaccaataatcataaacacagtaattacaattacatcaggcctc
tatcaaactgcagaaacaacagaagaagagattagtcaaattcctccagacttgtggaat
aagaaagatataaaaaatttaaaaatgtggtttcttgaagaatcaaacgcaaatgaagat
acaaatccaactgctgaactggttcccacaggagagtcattgaaaatgaatgtggaatct
gttcttctaacacttgaagctggggttgggcaccgaactgtaccaatgcttttagccaag
tcgtcatttcttggagaagtcaaaaactggagtactctaatcaacctacgttctcatcta
gagctagaggtacactattttaatgaaatgtttggggtgtgggaacctttgcttgagcca
ctagaagttgagaagactgatttattcaaaccatggattcttgaaatcaagatgaagaag
aaggctaaaaaagcattggttgaatcagatgcggaagaagaaaactacaaagttccagaa
tataaaactgtaataaatgtttcctcaaaagatcagctgaacattacactctccaaatgt
gggctacaaatgttgagtaacttgggcacggcatttgctgaagcagctagtcaaacttca
gacatcttcaaaaaagaccgagcaccatttgtaataataaattctttaggacttcctatc
actgtctcacctagtgattcctttagtgtccttaatgttgaatttggagcaaaaatattt
catttaagagatggagagaatttaaatatggaatttgtcagaactaaaaatgagagtgac
cagttcacagcaatgacaactctgagtagcaagaggttttacattcagatctgtccacat
aatcattccactgtggaaaagattccattgacaaaagtgggtcgatgtatttacagagtg
agacatgaggaatcaggtgttgaaagatccattgtctgccaaattgacacagttgaagga
agcaagatgataactatacgttctcctattcagataaggaatcatttttcaatcccgcta
aatatttttgaggaaggaagatgtttaggggctgcttcaccagaaaatgaattcaacata
ccattgtcctcttacagatccgtactgagtttgcaaccgctagccaatgaaagtggagtg
gatggtgaatatgatatgtgtgaagggattacatttgaggaaattctgaaaaatgttgac
agtttattacaaaggaaatgccagtctgtgaggtcaactaaccactcactcatcatcaat
attgttcctgtaaaagacacagtgacatcttcatcatgtgcagaagatcagtgggatttt
ccatatgttgttcatttatggccttctgttcttctccgcaatcttcttccttatcacata
acttactctgtagagggaaatgggaacaaatatgacaccctacaagagggatgttcagcc
cagattcataatgcagtcttggatcaaacaaaactagatttacagttacttaactatctt
gatcaaaattggaaaagtgagtaccatataaaaagcaatctaccagaaatcagctttacg
acattttactgcatcacagagttggataagaccgaactggatattgctgttcacgtgacc
tacacaactggacagatggttatagcaattcacagtccgtactggatggtaaataaaacc
gggcgaatgttgcagtacaaagctgatggtattcaccgcaagcatcctccagattacaaa
aagccgctccttttttctttccagcccaaaaacttcttccaaaataataaggtgcaactt
atggtaactgacagtgagctgtctgatcagttttcactggacacagttggaagtcatggt
tctgtgaaatgcaagagtcataaaaaggagtatcaagtcggtgtcaccataaacatcagc
agttttaatattaccagaattgtaactttcactccattttttatgatctcaaatagaagc
aaatacactttggaagtagctgaagaaggcaaggaaaagtggattcctattgttttgcaa
cagtggtgtgagaaacaatgggaaagggaacttagtggcatgtgcattcccttttggcca
gaaaatgatgctaacaaactgcttgttagagttgaaaattctgacctccccccaaagaag
ataaattttgataagcaagaaaactgtctactgctgcatttggacaacaagcttggagga
attacagtggatgttaacctgactgaacattctacagtaattaccttttctaattaccat
gatggcgcagctccatttctgttgataaaccatactaaagaggaaattattgagtatgga
caaagctccctcagtgagttggaagactgcctccagccaaataaggcagtattgtatact
tgggcagatccagcaggatctagaaaattgaaatggaaatgtggaaatagaactgaggaa
gttaccccaaaagaggacaaaatggaaatactcagactggattgtagaaaagtagtctat
ttagtgtcattttttgaaggtttgcagcgtattgtcctgatcactgatgatgagaatgta
tttaaattgacatatgaaagtgtaaaagcagaactagcagaacaagaaatagttctgtct
ttgcaagatgttggaatttccttggttaataattctacaaagcaagaggtgtcctacatt
ggaattacaagttctgatgtggtttgggagacaaaacccaagaagaagtcgagatggaga
ccaatgagtgttaagcagactgataaattagaacaagaattcaaagattacagtgagctg
actccttcagaaaataagattattgagttggaatcaaatgttttggtatgtttaactcct
aatggaatgaacatgaaaattcagcaaccaaatgagattcctatcagaaggaattatctg
ccagctttaaaagtagaatatagttcatctgcgcatcagaagtctttcagaattcaaatt
tacaggatacagatacaaaaccagattcctggagccatatttccctttgtgttctatcct
attaaacctccaaagtccatcaccttggattcagcaccaaaaccatttactgatgtcagt
attgtcatgagaactgcaggacagtcacaaatatctcatattaagtattttaaggtactg
attcaagagatggatctcagattagatcttggcttcctgtatgcactggttgaattcttt
acacagactgaagtgccgagtgaccaagagctagaacttttcaaaaaggatgttgaatct
cttcaagaagaactgatgagtgtgtcatcaatggatacgtcacaaatcagcttgtatgaa
tactttcatatctctccaattaagttacacttaagcttttcactcagtacgggtggagag
gacagtaacaaagaagaaagaaagaatgaattgataccacttcagtctttgaatctcctg
ctgaaaagtataggggccaccctcacggatgtacaagatgttgtctttaagttggcattc
ttcgaactcaactatcacttctgtactacgcagcagctccaatcggcagttgtaagacat
tattcaaaacaggctattaaacagatgtatgttcttatacttggccttgatgtcttgggt
aatccatttggattcatcagaggtttgtctgaaggagtagaagcattcttctatgaacct
taccagggagccatccagggtcctgaagaatttatagaaggaatggcactaggacttaaa
gcactagtagggggagctgttggtggattagctggtgctgcatcgagaatcactggtgct
atggcaaaaggagtagctgcgataactatggatgaggattaccagcagaaaaggagagaa
gcaatgaataaacagcccactggtctgagagagggtatcactcgtggcggaaaaggatta
gtttctggttttgtcagtggcataacaggaatagttacaaaaccaataagaggagctcag
aaagaaggagcagctggttttttcaaaggtgttggaaaaggcttagtgggagcagtagct
aggcctactggaggaatcatagacatggcaagcagcacatttcagggtattaaaaaagtt
gcagattcatcagaagatgtgataagcttgcgcccacctcgcttctttggtgaagatgga
gttattagaccttacagattaagagatggaactggaagtcaaatgttacagaaaattgaa
aacggaagatttgcaaaactcagatatattgcacatgctatggtcaacagtacagatcta
ttaatggtaacaaaaagtggtgtgttatttgtgactaaagggacttttggacagctgacc
tgtgaatggcaatacagttatgatgaatttaccaaagaaccattcatcgttgatggcagg
agattacgcattgaagccaaggaacgagttaagtctgtgtttcatgccaaagaatttgga
aaaataattaattttaaaagtccagaggatgctaagtggatcctttctaagctggaagaa
gtgagagagaatcagccaaaattgtaa |
|---|
